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Magnesium in PDB 5z2w: Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb

Protein crystallography data

The structure of Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb, PDB code: 5z2w was solved by Y.Choi, H.J.Yoon, H.H.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.47 / 3.00
Space group P 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 63.557, 39.306, 73.191, 90.00, 94.77, 90.00
R / Rfree (%) 20.7 / 27.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb (pdb code 5z2w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb, PDB code: 5z2w:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 5z2w

Go back to Magnesium Binding Sites List in 5z2w
Magnesium binding site 1 out of 2 in the Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:78.0
occ:1.00
OE1 A:GLU127 3.5 90.0 1.0
OG1 A:THR167 4.0 82.1 1.0
CE A:MET168 4.2 82.4 1.0
CD A:GLU127 4.3 86.6 1.0
CE A:MET128 4.3 80.6 1.0
OE2 A:GLU127 4.7 90.8 1.0
CA A:GLY124 4.9 76.1 1.0

Magnesium binding site 2 out of 2 in 5z2w

Go back to Magnesium Binding Sites List in 5z2w
Magnesium binding site 2 out of 2 in the Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Bacterial Cell Division Protein Ftsq and Ftsb within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg402

b:47.8
occ:1.00
N A:ARG164 2.9 69.2 1.0
NH1 A:ARG170 3.1 53.5 1.0
ND2 B:ASN284 3.3 46.4 1.0
OE1 B:GLU280 3.4 80.9 1.0
CG B:GLU280 3.5 65.0 1.0
CA A:GLY163 3.6 61.4 1.0
CD B:GLU280 3.6 77.3 1.0
N A:GLY165 3.7 57.5 1.0
C A:GLY163 3.8 62.1 1.0
CA A:ARG164 3.8 65.7 1.0
NH2 A:ARG170 3.9 57.9 1.0
CB A:ARG164 3.9 60.2 1.0
CZ A:ARG170 3.9 55.3 1.0
C A:ARG164 4.3 64.8 1.0
CG B:ASN284 4.3 54.5 1.0
CG A:ARG198 4.4 52.1 1.0
OE2 B:GLU280 4.6 69.0 1.0
CB A:ARG198 4.6 50.5 1.0
CG A:ARG164 4.7 68.5 1.0
O A:LEU162 4.7 60.3 1.0
OD1 B:ASN284 4.7 53.5 1.0
CA A:GLY165 4.8 60.7 1.0
N A:GLY163 4.9 54.4 1.0
CB B:GLU280 4.9 58.4 1.0
O A:GLY163 5.0 63.4 1.0

Reference:

Y.Choi, J.Kim, H.J.Yoon, K.S.Jin, S.Ryu, H.H.Lee. Structural Insights Into the Ftsq/Ftsb/Ftsl Complex, A Key Component of the Divisome. Sci Rep V. 8 18061 2018.
ISSN: ESSN 2045-2322
PubMed: 30584256
DOI: 10.1038/S41598-018-36001-2
Page generated: Mon Sep 30 11:41:29 2024

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