Magnesium in PDB 5z3v: Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State

The structure of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State (pdb code 5z3v). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State, PDB code: 5z3v:

Magnesium binding site 1 out of 1 in the Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of SNF2-Nucleosome Complex at Shl-2 in Adp Befx State within 5.0Å range: probe atom residue distance (Å) B Occ O:Mg1503 b:21.3 occ:1.00 O1B O:ADP1501 2.8 47.3 1.0 F1 O:BEF1502 3.1 55.0 1.0 OE2 O:GLU895 3.6 0.9 1.0 OD2 O:ASP894 3.7 0.4 1.0 O3B O:ADP1501 3.8 47.3 1.0 PB O:ADP1501 3.8 47.3 1.0 CD O:LYS798 4.1 1.0 1.0 CZ2 O:TRP831 4.2 0.0 1.0 OD1 O:ASP894 4.2 0.4 1.0 CG O:ASP894 4.4 0.4 1.0 O2A O:ADP1501 4.6 47.3 1.0 BE O:BEF1502 4.7 53.2 1.0 CH2 O:TRP831 4.7 0.6 1.0 O2B O:ADP1501 4.8 47.3 1.0 CB O:LYS798 4.8 0.5 1.0 F3 O:BEF1502 4.8 51.3 1.0 CD O:GLU895 4.8 0.0 1.0 CG O:LYS798 4.9 0.2 1.0 O3A O:ADP1501 5.0 47.3 1.0 NZ O:LYS798 5.0 0.7 1.0 CE O:LYS798 5.0 0.9 1.0

M.Li, X.Xia, Y.Tian, Q.Jia, X.Liu, Y.Lu, M.Li, X.Li, Z.Chen. Mechanism of Dna Translocation Underlying Chromatin Remodelling By SNF2. Nature V. 567 409 2019.
ISSN: ESSN 1476-4687
PubMed: 30867599
DOI: 10.1038/S41586-019-1029-2