Atomistry » Magnesium » PDB 5z68-5zk6 » 5z7x
Atomistry »
  Magnesium »
    PDB 5z68-5zk6 »
      5z7x »

Magnesium in PDB 5z7x: Crystal Structure of Striga Hermonthica HTL4 (SHHTL4)

Protein crystallography data

The structure of Crystal Structure of Striga Hermonthica HTL4 (SHHTL4), PDB code: 5z7x was solved by Y.Xu, T.Miyakawa, A.Nakamura, M.Tanokura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.98 / 2.06
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 63.800, 77.960, 99.000, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 23

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Striga Hermonthica HTL4 (SHHTL4) (pdb code 5z7x). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Striga Hermonthica HTL4 (SHHTL4), PDB code: 5z7x:

Magnesium binding site 1 out of 1 in 5z7x

Go back to Magnesium Binding Sites List in 5z7x
Magnesium binding site 1 out of 1 in the Crystal Structure of Striga Hermonthica HTL4 (SHHTL4)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Striga Hermonthica HTL4 (SHHTL4) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:41.3
occ:1.00
CG A:MET99 3.2 31.6 1.0
O A:THR121 3.2 28.7 1.0
N A:THR121 3.4 27.2 1.0
C A:SER95 3.4 28.4 1.0
O A:SER95 3.5 28.5 1.0
N A:LEU96 3.6 30.4 1.0
OG A:SER95 3.7 39.4 1.0
CA A:ALA120 3.9 25.5 1.0
CA A:LEU96 3.9 33.4 1.0
CA A:SER95 4.0 28.0 1.0
CB A:MET99 4.1 26.7 1.0
CG2 A:THR121 4.1 23.9 1.0
C A:THR121 4.1 25.2 1.0
C A:ALA120 4.1 22.9 1.0
CB A:ALA120 4.2 25.9 1.0
CA A:THR121 4.3 19.9 1.0
CB A:SER95 4.4 30.0 1.0
SD A:MET99 4.5 43.3 1.0
C A:LEU96 4.8 31.5 1.0
O A:SER119 4.8 28.7 1.0
CB A:THR121 4.8 26.9 1.0
O A:LEU96 5.0 30.9 1.0
CB A:LEU96 5.0 37.3 1.0

Reference:

Y.Xu, T.Miyakawa, S.Nosaki, A.Nakamura, Y.Lyu, H.Nakamura, U.Ohto, H.Ishida, T.Shimizu, T.Asami, M.Tanokura. Structural Analysis of Htl and D14 Proteins Reveals the Basis For Ligand Selectivity in Striga. Nat Commun V. 9 3947 2018.
ISSN: ESSN 2041-1723
PubMed: 30258184
DOI: 10.1038/S41467-018-06452-2
Page generated: Mon Sep 30 11:45:51 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy