Magnesium in PDB 5zgh: Cryo-Em Structure of the Red Algal Psi-Lhcr

All present enzymatic activity of Cryo-Em Structure of the Red Algal Psi-Lhcr:
1.97.1.12;

The structure of Cryo-Em Structure of the Red Algal Psi-Lhcr also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 120; Page 13, Binding sites: 121 - 130; Page 14, Binding sites: 131 - 134;

Binding sites:

The binding sites of Magnesium atom in the Cryo-Em Structure of the Red Algal Psi-Lhcr (pdb code 5zgh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 134 binding sites of Magnesium where determined in the Cryo-Em Structure of the Red Algal Psi-Lhcr, PDB code: 5zgh:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg601 b:0.2 occ:1.00 MG 1:CLA601 0.0 0.2 1.0 NB 1:CLA601 2.0 0.2 1.0 ND 1:CLA601 2.0 0.2 1.0 NA 1:CLA601 2.1 0.2 1.0 NC 1:CLA601 2.1 0.2 1.0 C4D 1:CLA601 2.9 0.2 1.0 C4A 1:CLA601 3.0 0.2 1.0 C1B 1:CLA601 3.0 0.2 1.0 C1C 1:CLA601 3.0 0.2 1.0 C4B 1:CLA601 3.1 0.2 1.0 C1A 1:CLA601 3.1 0.2 1.0 C4C 1:CLA601 3.1 0.2 1.0 C1D 1:CLA601 3.2 0.2 1.0 CHB 1:CLA601 3.4 0.2 1.0 CHC 1:CLA601 3.4 0.2 1.0 CHA 1:CLA601 3.5 0.2 1.0 CHD 1:CLA601 3.5 0.2 1.0 O1A 1:CLA601 4.1 0.2 1.0 C3D 1:CLA601 4.3 0.2 1.0 C2C 1:CLA601 4.3 0.2 1.0 C2B 1:CLA601 4.3 0.2 1.0 C3B 1:CLA601 4.3 0.2 1.0 C1 1:CLA601 4.3 0.2 1.0 CGA 1:CLA601 4.3 0.2 1.0 C3C 1:CLA601 4.3 0.2 1.0 C2D 1:CLA601 4.4 0.2 1.0 C3A 1:CLA601 4.4 0.2 1.0 C2A 1:CLA601 4.4 0.2 1.0 O2A 1:CLA601 4.5 0.2 1.0 CBD 1:CLA601 4.9 0.2 1.0 CD1 1:LEU6 4.9 75.5 1.0

Magnesium binding site 2 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg602 b:87.7 occ:1.00 MG 1:CLA602 0.0 87.7 1.0 NB 1:CLA602 2.0 87.7 1.0 ND 1:CLA602 2.0 87.7 1.0 NC 1:CLA602 2.1 87.7 1.0 NA 1:CLA602 2.1 87.7 1.0 C4D 1:CLA602 2.9 87.7 1.0 C1B 1:CLA602 3.0 87.7 1.0 C4A 1:CLA602 3.0 87.7 1.0 C4B 1:CLA602 3.0 87.7 1.0 C1C 1:CLA602 3.1 87.7 1.0 OE2 1:GLU43 3.1 78.7 1.0 C4C 1:CLA602 3.1 87.7 1.0 C1D 1:CLA602 3.1 87.7 1.0 C1A 1:CLA602 3.1 87.7 1.0 CD 1:GLU43 3.3 78.7 1.0 CHB 1:CLA602 3.4 87.7 1.0 CHC 1:CLA602 3.4 87.7 1.0 CHA 1:CLA602 3.5 87.7 1.0 OE1 1:GLU43 3.5 78.7 1.0 CHD 1:CLA602 3.5 87.7 1.0 C37 1:ZEX614 3.6 90.5 1.0 NE 1:ARG144 4.1 63.1 1.0 NH2 1:ARG144 4.1 63.1 1.0 CG 1:GLU43 4.2 78.7 1.0 C3D 1:CLA602 4.2 87.7 1.0 C2B 1:CLA602 4.3 87.7 1.0 C36 1:ZEX614 4.3 90.5 1.0 C3B 1:CLA602 4.3 87.7 1.0 C2C 1:CLA602 4.3 87.7 1.0 C2D 1:CLA602 4.3 87.7 1.0 CZ 1:ARG144 4.3 63.1 1.0 C3C 1:CLA602 4.3 87.7 1.0 C3A 1:CLA602 4.4 87.7 1.0 C2A 1:CLA602 4.4 87.7 1.0 C21 1:ZEX614 4.6 90.5 1.0 O2A 1:CLA602 4.8 87.7 1.0 CBD 1:CLA602 4.9 87.7 1.0 CD 1:ARG144 5.0 63.1 1.0 CBA 1:CLA602 5.0 87.7 1.0

Magnesium binding site 3 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg603 b:92.3 occ:1.00 MG 1:CLA603 0.0 92.3 1.0 NB 1:CLA603 2.0 92.3 1.0 ND 1:CLA603 2.0 92.3 1.0 NC 1:CLA603 2.1 92.3 1.0 NA 1:CLA603 2.1 92.3 1.0 C4D 1:CLA603 2.9 92.3 1.0 C1B 1:CLA603 3.0 92.3 1.0 C4A 1:CLA603 3.0 92.3 1.0 C4B 1:CLA603 3.0 92.3 1.0 C1C 1:CLA603 3.1 92.3 1.0 C1D 1:CLA603 3.1 92.3 1.0 C4C 1:CLA603 3.1 92.3 1.0 C1A 1:CLA603 3.2 92.3 1.0 CHB 1:CLA603 3.4 92.3 1.0 CHC 1:CLA603 3.4 92.3 1.0 CHA 1:CLA603 3.5 92.3 1.0 CHD 1:CLA603 3.5 92.3 1.0 OD1 1:ASN46 3.8 70.1 1.0 C3D 1:CLA603 4.2 92.3 1.0 ND2 1:ASN46 4.2 70.1 1.0 C2B 1:CLA603 4.3 92.3 1.0 C3B 1:CLA603 4.3 92.3 1.0 C2D 1:CLA603 4.3 92.3 1.0 C2C 1:CLA603 4.3 92.3 1.0 CG 1:ASN46 4.3 70.1 1.0 C3C 1:CLA603 4.4 92.3 1.0 C3A 1:CLA603 4.4 92.3 1.0 C2A 1:CLA603 4.5 92.3 1.0 CBD 1:CLA603 4.9 92.3 1.0

Magnesium binding site 4 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg604 b:0.5 occ:1.00 MG 1:CLA604 0.0 0.5 1.0 ND 1:CLA604 2.0 0.5 1.0 NB 1:CLA604 2.0 0.5 1.0 NC 1:CLA604 2.1 0.5 1.0 NA 1:CLA604 2.1 0.5 1.0 C4D 1:CLA604 2.9 0.5 1.0 C1B 1:CLA604 3.0 0.5 1.0 C4A 1:CLA604 3.0 0.5 1.0 C4B 1:CLA604 3.0 0.5 1.0 C1C 1:CLA604 3.1 0.5 1.0 C4C 1:CLA604 3.1 0.5 1.0 C1D 1:CLA604 3.1 0.5 1.0 C1A 1:CLA604 3.1 0.5 1.0 CD2 1:HIS56 3.2 77.6 1.0 CHB 1:CLA604 3.4 0.5 1.0 CHC 1:CLA604 3.4 0.5 1.0 CHA 1:CLA604 3.5 0.5 1.0 CHD 1:CLA604 3.5 0.5 1.0 CG 1:HIS56 3.6 77.6 1.0 CB 1:HIS56 3.7 77.6 1.0 O1A 1:CLA604 4.1 0.5 1.0 NE2 1:HIS56 4.2 77.6 1.0 C3D 1:CLA604 4.2 0.5 1.0 C2B 1:CLA604 4.3 0.5 1.0 C3B 1:CLA604 4.3 0.5 1.0 C2C 1:CLA604 4.3 0.5 1.0 C2D 1:CLA604 4.3 0.5 1.0 C3C 1:CLA604 4.4 0.5 1.0 C3A 1:CLA604 4.4 0.5 1.0 C2A 1:CLA604 4.4 0.5 1.0 ND1 1:HIS56 4.7 77.6 1.0 CA 1:HIS56 4.7 77.6 1.0 CGA 1:CLA604 4.9 0.5 1.0 C13 1:ZEX616 4.9 0.1 1.0 CBD 1:CLA604 4.9 0.5 1.0 CE1 1:HIS56 4.9 77.6 1.0

Magnesium binding site 5 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg605 b:0.8 occ:1.00 MG 1:CLA605 0.0 0.8 1.0 NB 1:CLA605 2.0 0.8 1.0 ND 1:CLA605 2.0 0.8 1.0 NC 1:CLA605 2.1 0.8 1.0 NA 1:CLA605 2.1 0.8 1.0 C4D 1:CLA605 2.9 0.8 1.0 C1B 1:CLA605 3.0 0.8 1.0 C4A 1:CLA605 3.0 0.8 1.0 C4B 1:CLA605 3.1 0.8 1.0 C1C 1:CLA605 3.1 0.8 1.0 C4C 1:CLA605 3.1 0.8 1.0 C1D 1:CLA605 3.2 0.8 1.0 C1A 1:CLA605 3.2 0.8 1.0 OE1 1:GLN90 3.3 0.3 1.0 CHB 1:CLA605 3.4 0.8 1.0 CHC 1:CLA605 3.4 0.8 1.0 CHA 1:CLA605 3.5 0.8 1.0 CHD 1:CLA605 3.5 0.8 1.0 CD 1:GLN90 3.9 0.3 1.0 NE2 1:GLN90 4.0 0.3 1.0 C3D 1:CLA605 4.3 0.8 1.0 C2B 1:CLA605 4.3 0.8 1.0 C3B 1:CLA605 4.3 0.8 1.0 C2C 1:CLA605 4.3 0.8 1.0 C2D 1:CLA605 4.4 0.8 1.0 C3C 1:CLA605 4.4 0.8 1.0 C3A 1:CLA605 4.4 0.8 1.0 C2A 1:CLA605 4.5 0.8 1.0 C36 1:ZEX616 4.6 0.1 1.0 CBD 1:CLA605 4.9 0.8 1.0 CB 1:ALA87 5.0 0.2 1.0

Magnesium binding site 6 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg606 b:97.7 occ:1.00 MG 1:CLA606 0.0 97.7 1.0 NB 1:CLA606 2.0 97.7 1.0 ND 1:CLA606 2.0 97.7 1.0 NA 1:CLA606 2.1 97.7 1.0 NC 1:CLA606 2.1 97.7 1.0 C4D 1:CLA606 2.9 97.7 1.0 C1B 1:CLA606 3.0 97.7 1.0 C4A 1:CLA606 3.0 97.7 1.0 C4B 1:CLA606 3.0 97.7 1.0 C1C 1:CLA606 3.1 97.7 1.0 NE2 1:HIS79 3.1 0.4 1.0 C1D 1:CLA606 3.1 97.7 1.0 C4C 1:CLA606 3.2 97.7 1.0 C1A 1:CLA606 3.2 97.7 1.0 CHB 1:CLA606 3.4 97.7 1.0 CHC 1:CLA606 3.4 97.7 1.0 CHA 1:CLA606 3.5 97.7 1.0 CE1 1:HIS79 3.5 0.4 1.0 CHD 1:CLA606 3.5 97.7 1.0 C3D 1:CLA606 4.2 97.7 1.0 C2B 1:CLA606 4.3 97.7 1.0 C3B 1:CLA606 4.3 97.7 1.0 C2D 1:CLA606 4.3 97.7 1.0 C2C 1:CLA606 4.3 97.7 1.0 CD2 1:HIS79 4.4 0.4 1.0 C3C 1:CLA606 4.4 97.7 1.0 C3A 1:CLA606 4.4 97.7 1.0 C2A 1:CLA606 4.5 97.7 1.0 ND1 1:HIS79 4.7 0.4 1.0 O3 1:ZEX617 4.9 90.8 1.0 CBD 1:CLA606 4.9 97.7 1.0

Magnesium binding site 7 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg607 b:95.8 occ:1.00 MG 1:CLA607 0.0 95.8 1.0 NB 1:CLA607 2.0 95.8 1.0 ND 1:CLA607 2.0 95.8 1.0 NC 1:CLA607 2.1 95.8 1.0 NA 1:CLA607 2.1 95.8 1.0 C4D 1:CLA607 2.9 95.8 1.0 C1B 1:CLA607 3.0 95.8 1.0 C4A 1:CLA607 3.0 95.8 1.0 C4B 1:CLA607 3.0 95.8 1.0 C1C 1:CLA607 3.1 95.8 1.0 C4C 1:CLA607 3.1 95.8 1.0 C1A 1:CLA607 3.1 95.8 1.0 C1D 1:CLA607 3.1 95.8 1.0 OE1 1:GLU99 3.3 87.6 1.0 CHB 1:CLA607 3.4 95.8 1.0 CHC 1:CLA607 3.4 95.8 1.0 CHA 1:CLA607 3.4 95.8 1.0 CHD 1:CLA607 3.5 95.8 1.0 OE2 1:GLU99 3.7 87.6 1.0 CD 1:GLU99 3.9 87.6 1.0 NZ 1:LYS45 4.2 74.9 1.0 C3D 1:CLA607 4.2 95.8 1.0 C2B 1:CLA607 4.3 95.8 1.0 C3B 1:CLA607 4.3 95.8 1.0 C2C 1:CLA607 4.3 95.8 1.0 C2D 1:CLA607 4.3 95.8 1.0 C3C 1:CLA607 4.3 95.8 1.0 C3A 1:CLA607 4.4 95.8 1.0 CMD 1:CLA603 4.4 92.3 1.0 C2A 1:CLA607 4.5 95.8 1.0 CBA 1:CLA607 4.8 95.8 1.0 CBD 1:CLA607 4.9 95.8 1.0 CE 1:LYS45 4.9 74.9 1.0

Magnesium binding site 8 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg608 b:0.4 occ:1.00 MG 1:CLA608 0.0 0.4 1.0 NB 1:CLA608 2.0 0.4 1.0 ND 1:CLA608 2.0 0.4 1.0 NC 1:CLA608 2.1 0.4 1.0 NA 1:CLA608 2.1 0.4 1.0 C4D 1:CLA608 2.9 0.4 1.0 C1B 1:CLA608 3.0 0.4 1.0 C4A 1:CLA608 3.0 0.4 1.0 C4B 1:CLA608 3.1 0.4 1.0 OE2 1:GLU139 3.1 79.9 1.0 C1C 1:CLA608 3.1 0.4 1.0 C4C 1:CLA608 3.1 0.4 1.0 C1D 1:CLA608 3.1 0.4 1.0 C1A 1:CLA608 3.1 0.4 1.0 CHB 1:CLA608 3.4 0.4 1.0 CHC 1:CLA608 3.4 0.4 1.0 CHA 1:CLA608 3.5 0.4 1.0 CHD 1:CLA608 3.5 0.4 1.0 CD 1:GLU139 3.5 79.9 1.0 OE1 1:GLU139 3.9 79.9 1.0 C3D 1:CLA608 4.3 0.4 1.0 C2B 1:CLA608 4.3 0.4 1.0 C3B 1:CLA608 4.3 0.4 1.0 C2C 1:CLA608 4.3 0.4 1.0 C3C 1:CLA608 4.3 0.4 1.0 C2D 1:CLA608 4.4 0.4 1.0 C3A 1:CLA608 4.4 0.4 1.0 CG 1:GLU139 4.4 79.9 1.0 CD 1:ARG48 4.4 70.9 1.0 C2A 1:CLA608 4.4 0.4 1.0 C25 1:ZEX613 4.7 0.2 1.0 O2A 1:CLA608 4.8 0.4 1.0 C26 1:ZEX613 4.8 0.2 1.0 CBD 1:CLA608 4.9 0.4 1.0 CBA 1:CLA608 5.0 0.4 1.0

Magnesium binding site 9 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg609 b:0.3 occ:1.00 MG 1:CLA609 0.0 0.3 1.0 NB 1:CLA609 2.0 0.3 1.0 ND 1:CLA609 2.0 0.3 1.0 NC 1:CLA609 2.1 0.3 1.0 NA 1:CLA609 2.1 0.3 1.0 C4D 1:CLA609 2.9 0.3 1.0 C1B 1:CLA609 3.0 0.3 1.0 C4A 1:CLA609 3.0 0.3 1.0 C4B 1:CLA609 3.1 0.3 1.0 C1C 1:CLA609 3.1 0.3 1.0 C4C 1:CLA609 3.1 0.3 1.0 C1D 1:CLA609 3.1 0.3 1.0 C1A 1:CLA609 3.2 0.3 1.0 CHB 1:CLA609 3.4 0.3 1.0 CHC 1:CLA609 3.4 0.3 1.0 CHA 1:CLA609 3.5 0.3 1.0 CHD 1:CLA609 3.5 0.3 1.0 C3D 1:CLA609 4.2 0.3 1.0 C2B 1:CLA609 4.3 0.3 1.0 C3B 1:CLA609 4.3 0.3 1.0 C2C 1:CLA609 4.3 0.3 1.0 C2D 1:CLA609 4.3 0.3 1.0 C3C 1:CLA609 4.4 0.3 1.0 C3A 1:CLA609 4.4 0.3 1.0 C2A 1:CLA609 4.5 0.3 1.0 NH2 1:ARG23 4.6 78.8 1.0 CBD 1:CLA609 4.9 0.3 1.0 CED 1:CLA601 5.0 0.2 1.0

Magnesium binding site 10 out of 134 in the Cryo-Em Structure of the Red Algal Psi-Lhcr


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Cryo-Em Structure of the Red Algal Psi-Lhcr within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg610 b:1.0 occ:1.00 MG 1:CLA610 0.0 1.0 1.0 NB 1:CLA610 2.0 1.0 1.0 ND 1:CLA610 2.0 1.0 1.0 NC 1:CLA610 2.1 1.0 1.0 NA 1:CLA610 2.1 1.0 1.0 C4D 1:CLA610 2.9 1.0 1.0 C1B 1:CLA610 3.0 1.0 1.0 C4A 1:CLA610 3.0 1.0 1.0 C4B 1:CLA610 3.1 1.0 1.0 C1C 1:CLA610 3.1 1.0 1.0 C1D 1:CLA610 3.1 1.0 1.0 C4C 1:CLA610 3.1 1.0 1.0 OD1 1:ASN142 3.1 76.8 1.0 C1A 1:CLA610 3.2 1.0 1.0 CHB 1:CLA610 3.4 1.0 1.0 CHC 1:CLA610 3.4 1.0 1.0 CHA 1:CLA610 3.5 1.0 1.0 CHD 1:CLA610 3.5 1.0 1.0 CG 1:ASN142 3.8 76.8 1.0 ND2 1:ASN142 3.9 76.8 1.0 C3D 1:CLA610 4.2 1.0 1.0 C2B 1:CLA610 4.3 1.0 1.0 C3B 1:CLA610 4.3 1.0 1.0 C2C 1:CLA610 4.3 1.0 1.0 C2D 1:CLA610 4.3 1.0 1.0 C3C 1:CLA610 4.4 1.0 1.0 C3A 1:CLA610 4.4 1.0 1.0 C2A 1:CLA610 4.5 1.0 1.0 CBD 1:CLA610 4.9 1.0 1.0

X.Pi, L.Tian, H.E.Dai, X.Qin, L.Cheng, T.Kuang, S.F.Sui, J.R.Shen. Unique Organization of Photosystem I-Light-Harvesting Supercomplex Revealed By Cryo-Em From A Red Alga Proc. Natl. Acad. Sci. V. 115 4423 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29632169
DOI: 10.1073/PNAS.1722482115