Magnesium in PDB 5zo7: Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138

The structure of Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138, PDB code: 5zo7 was solved by H.Yokoyama, K.Sato, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.52 / 2.60
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	158.347, 50.580, 93.689, 90.00, 102.20, 90.00
R / Rfree (%)	22.5 / 28.3

The binding sites of Magnesium atom in the Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138 (pdb code 5zo7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138, PDB code: 5zo7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:36.8 occ:1.00 O1B A:ADP600 2.0 31.7 1.0 O A:HOH708 2.3 26.6 1.0 O A:HOH718 2.3 25.5 1.0 OG1 A:THR112 2.4 19.4 1.0 PB A:ADP600 3.2 33.6 1.0 CB A:THR112 3.3 20.9 1.0 O3B A:ADP600 3.4 34.5 1.0 O1A A:ADP600 3.9 31.8 1.0 O3A A:ADP600 4.2 30.5 1.0 PA A:ADP600 4.2 31.0 1.0 N A:THR112 4.3 21.2 1.0 CG2 A:THR112 4.3 21.1 1.0 O2A A:ADP600 4.3 32.5 1.0 CA A:THR112 4.4 21.7 1.0 O2B A:ADP600 4.4 31.9 1.0 OD2 A:ASP265 4.5 31.0 1.0 O A:SER232 4.7 27.2 1.0 CB A:SER232 4.7 28.5 1.0 O A:HOH706 4.8 24.7 1.0 O A:HOH712 4.9 25.0 1.0 OD1 A:ASP265 4.9 31.6 1.0

Magnesium binding site 2 out of 2 in the Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Kinesin Spindle Protein EG5 in Complex with Stlc-Type Inhibitor PVEI0138 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:37.5 occ:1.00 O2B B:ADP600 2.2 36.5 1.0 O B:HOH703 2.3 23.7 1.0 O3B B:ADP600 3.1 37.6 1.0 PB B:ADP600 3.2 36.3 1.0 OG1 B:THR112 3.2 32.4 1.0 O2A B:ADP600 3.9 36.8 1.0 O B:SER232 4.1 36.1 1.0 CB B:THR112 4.2 34.2 1.0 O1B B:ADP600 4.2 35.8 1.0 CB B:SER232 4.3 38.3 1.0 O3A B:ADP600 4.4 36.2 1.0 C B:SER232 4.4 36.8 1.0 PA B:ADP600 4.7 36.9 1.0 N B:SER233 4.8 37.3 1.0 CA B:SER232 4.9 37.5 1.0 N B:THR112 4.9 33.2 1.0 CA B:SER233 5.0 36.9 1.0 NZ B:LYS111 5.0 31.6 1.0

H.Yokoyama, J.I.Sawada, K.Sato, N.Ogo, N.Kamei, Y.Ishikawa, K.Hara, A.Asai, H.Hashimoto. Structural and Thermodynamic Basis of the Enhanced Interaction Between Kinesin Spindle Protein EG5 and Stlc-Type Inhibitors. Acs Omega V. 3 12284 2018.
ISSN: ESSN 2470-1343
PubMed: 31459302
DOI: 10.1021/ACSOMEGA.8B00778