Magnesium in PDB 5zpu: LFS829 in Complex with CRM1-Ran-RANBP1

Protein crystallography data

The structure of LFS829 in Complex with CRM1-Ran-RANBP1, PDB code: 5zpu was solved by Q.Sun, Y.Lei, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 2.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.438, 105.438, 303.907, 90.00, 90.00, 90.00
R / Rfree (%) 22.5 / 25.9

Other elements in 5zpu:

The structure of LFS829 in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the LFS829 in Complex with CRM1-Ran-RANBP1 (pdb code 5zpu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the LFS829 in Complex with CRM1-Ran-RANBP1, PDB code: 5zpu:

Magnesium binding site 1 out of 1 in 5zpu

Go back to Magnesium Binding Sites List in 5zpu
Magnesium binding site 1 out of 1 in the LFS829 in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of LFS829 in Complex with CRM1-Ran-RANBP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:42.3
occ:1.00
O1B A:GTP301 1.9 46.1 1.0
O2G A:GTP301 2.0 53.0 1.0
O A:HOH403 2.2 51.8 1.0
O A:HOH401 2.2 36.1 1.0
OG1 A:THR42 2.2 48.6 1.0
OG1 A:THR24 2.2 42.3 1.0
PG A:GTP301 3.0 46.9 1.0
PB A:GTP301 3.1 43.1 1.0
CB A:THR42 3.3 52.6 1.0
O3G A:GTP301 3.3 47.3 1.0
CB A:THR24 3.4 43.3 1.0
O3B A:GTP301 3.4 46.2 1.0
N A:THR42 3.8 52.8 1.0
O1A A:GTP301 4.0 49.7 1.0
N A:THR24 4.0 43.8 1.0
O2B A:GTP301 4.1 41.2 1.0
CA A:THR42 4.1 52.5 1.0
O3A A:GTP301 4.2 41.0 1.0
CA A:THR24 4.3 43.5 1.0
OD2 A:ASP65 4.3 48.5 1.0
OD1 A:ASP65 4.3 49.9 1.0
O A:THR66 4.3 51.3 1.0
CG2 A:THR42 4.3 54.9 1.0
O1G A:GTP301 4.4 51.3 1.0
O A:HOH421 4.4 43.2 1.0
CG2 A:THR24 4.4 43.4 1.0
PA A:GTP301 4.5 44.4 1.0
CG A:ASP65 4.7 48.9 1.0
NZ A:LYS23 4.8 49.0 1.0
CB A:LYS23 4.8 42.7 1.0
O A:VAL40 4.8 50.2 1.0
C A:ALA41 4.9 53.8 1.0
CE A:LYS23 4.9 47.0 1.0
O2A A:GTP301 5.0 45.5 1.0

Reference:

Q.Sun, Y.Lei. To Be Published To Be Published.
Page generated: Mon Dec 14 22:18:05 2020

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