Magnesium in PDB 5zqt: Crystal Structure of Oryza Sativa Hexokinase 6

All present enzymatic activity of Crystal Structure of Oryza Sativa Hexokinase 6:
2.7.1.1;

The structure of Crystal Structure of Oryza Sativa Hexokinase 6, PDB code: 5zqt was solved by K.Matsudaira, S.Mochizuki, H.Yoshida, S.Kamitori, K.Akimitsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.79 / 2.84
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	131.600, 131.600, 188.920, 90.00, 90.00, 120.00
R / Rfree (%)	20.3 / 26.6

The binding sites of Magnesium atom in the Crystal Structure of Oryza Sativa Hexokinase 6 (pdb code 5zqt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Oryza Sativa Hexokinase 6, PDB code: 5zqt:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Oryza Sativa Hexokinase 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Oryza Sativa Hexokinase 6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg602 b:48.6 occ:1.00 O2B A:ANP601 3.2 79.0 1.0 OD2 A:ASP109 3.5 48.6 1.0 O3G A:ANP601 3.5 79.0 1.0 OG A:SER488 3.6 65.7 1.0 OD1 A:ASP109 3.8 49.8 1.0 CG A:ASP109 4.1 46.8 1.0 O1A A:ANP601 4.6 74.8 1.0 CB A:ASP238 4.6 40.4 1.0 OG A:SER185 4.6 39.6 1.0 PB A:ANP601 4.6 79.0 1.0 OD2 A:ASP238 4.7 40.7 1.0 CB A:SER488 4.7 66.5 1.0 PG A:ANP601 4.7 79.0 1.0 OD2 A:ASP449 4.8 56.5 1.0 O2G A:ANP601 4.9 79.0 1.0 CA A:GLY111 4.9 40.9 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Oryza Sativa Hexokinase 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Oryza Sativa Hexokinase 6 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg602 b:55.9 occ:1.00 O1G B:ANP601 2.5 79.0 1.0 O1B B:ANP601 3.1 79.0 1.0 OG B:SER488 3.6 66.8 1.0 OD2 B:ASP238 3.7 50.6 1.0 OD2 B:ASP109 3.8 65.4 1.0 PG B:ANP601 3.9 79.0 1.0 OD1 B:ASP109 4.1 64.2 1.0 PB B:ANP601 4.2 79.0 1.0 CB B:ASP238 4.3 47.0 1.0 O2G B:ANP601 4.3 79.0 1.0 OG B:SER185 4.4 52.4 1.0 CG B:ASP109 4.4 63.5 1.0 CG B:ASP238 4.5 48.7 1.0 O2B B:ANP601 4.5 79.0 1.0 CB B:SER488 4.6 65.7 1.0 N3B B:ANP601 4.7 79.0 1.0 OD2 B:ASP449 4.8 63.3 1.0 CA B:GLY111 4.9 48.4 1.0 CG2 B:ILE258 5.0 54.7 1.0

Magnesium binding site 3 out of 3 in the Crystal Structure of Oryza Sativa Hexokinase 6


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Oryza Sativa Hexokinase 6 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg602 b:55.5 occ:1.00 O2G C:ANP601 2.4 73.8 1.0 O C:HOH702 2.6 45.4 1.0 O2B C:ANP601 2.7 79.0 1.0 OD1 C:ASP109 3.7 45.9 1.0 PG C:ANP601 3.9 76.2 1.0 OD2 C:ASP109 4.0 41.6 1.0 PB C:ANP601 4.0 79.0 1.0 OG C:SER185 4.2 42.6 1.0 CA C:GLY111 4.2 39.0 1.0 CG C:ASP109 4.2 42.7 1.0 OG C:SER488 4.3 63.2 1.0 N3B C:ANP601 4.5 79.0 1.0 O3G C:ANP601 4.6 72.7 1.0 O1B C:ANP601 4.7 79.0 1.0 N C:GLY111 4.7 39.7 1.0 CB C:SER488 4.7 64.5 1.0 CB C:ASP238 4.8 36.7 1.0 O1G C:ANP601 4.9 73.1 1.0

K.Matsudaira, S.Mochizuki, H.Yoshida, S.Kamitori, K.Akimitsu. Crystal Structure of Oryza Sativa Hexokinase 6 To Be Published.