Magnesium in PDB 6a08: The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid

All present enzymatic activity of The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid:
1.1.3.46;

The structure of The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid, PDB code: 6a08 was solved by T.L.Li, K.H.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.34 / 1.55
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	137.911, 137.911, 111.773, 90.00, 90.00, 90.00
R / Rfree (%)	16.4 / 18.6

The binding sites of Magnesium atom in the The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid (pdb code 6a08). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid, PDB code: 6a08:

Magnesium binding site 1 out of 1 in the The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of Mandelate Oxidase with Benzoyl-Formic Acid within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:16.6 occ:1.00 O3P A:FMN402 2.7 9.9 1.0 O A:LEU304 2.8 8.7 1.0 N A:GLY284 2.9 7.5 1.0 N A:ILE286 3.2 7.9 1.0 CG1 A:ILE286 3.4 10.1 1.0 N A:GLY285 3.4 8.3 1.0 CB A:ILE286 3.4 10.5 1.0 C A:GLY284 3.6 9.8 1.0 P A:FMN402 3.6 10.3 1.0 O5' A:FMN402 3.6 14.8 1.0 CA A:GLY284 3.6 8.0 1.0 C A:ASP283 3.8 10.4 1.0 CA A:ILE286 3.9 8.2 1.0 C A:LEU304 3.9 7.6 1.0 CB A:ASP283 3.9 7.8 1.0 CA A:ASP283 3.9 7.7 1.0 O2P A:FMN402 3.9 11.4 1.0 CA A:VAL305 4.0 7.7 1.0 NH1 A:ARG287 4.1 12.2 1.0 C A:GLY285 4.2 9.2 1.0 O A:GLY284 4.3 11.1 1.0 O A:ILE286 4.3 12.4 1.0 CA A:GLY285 4.3 10.3 1.0 N A:VAL305 4.4 7.3 1.0 N A:GLY306 4.5 8.7 1.0 C A:ILE286 4.6 11.1 1.0 C5' A:FMN402 4.7 15.9 1.0 C A:VAL305 4.7 8.1 1.0 CD1 A:ILE286 4.8 13.8 1.0 CG2 A:VAL305 4.8 9.7 1.0 CG2 A:ILE286 4.8 13.5 1.0 CB A:VAL305 4.9 6.5 1.0 CG A:ASP283 4.9 12.4 1.0 O A:ASP283 5.0 10.2 1.0

S.Y.Lyu, K.H.Lin, H.W.Yeh, Y.S.Li, C.M.Huang, Y.L.Wang, H.W.Shih, N.S.Hsu, C.J.Wu, T.L.Li. The Flavin Mononucleotide Cofactor in Alpha-Hydroxyacid Oxidases Exerts Its Electrophilic/Nucleophilic Duality in Control of the Substrate-Oxidation Level. Acta Crystallogr D Struct V. 75 918 2019BIOL.
ISSN: ISSN 2059-7983
PubMed: 31588923
DOI: 10.1107/S2059798319011938