Magnesium in PDB 6a1w: Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct

Enzymatic activity of Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct

All present enzymatic activity of Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct:
1.1.3.46;

Protein crystallography data

The structure of Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct, PDB code: 6a1w was solved by T.L.Li, K.H.Lin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 137.541, 137.541, 112.180, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 19.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct (pdb code 6a1w). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct, PDB code: 6a1w:

Magnesium binding site 1 out of 1 in 6a1w

Go back to Magnesium Binding Sites List in 6a1w
Magnesium binding site 1 out of 1 in the Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg401

b:16.9
occ:1.00
OBF A:9P3402 2.6 10.5 1.0
O A:LEU304 2.8 8.5 1.0
N A:GLY284 2.9 7.5 1.0
N A:ILE286 3.2 8.3 1.0
CG1 A:ILE286 3.4 8.2 1.0
N A:GLY285 3.4 8.0 1.0
CB A:ILE286 3.5 8.8 1.0
C A:GLY284 3.6 8.3 1.0
PBC A:9P3402 3.6 10.9 1.0
CA A:GLY284 3.6 8.0 1.0
OAY A:9P3402 3.8 13.3 1.0
C A:ASP283 3.9 10.5 1.0
C A:LEU304 3.9 9.6 1.0
CA A:ILE286 3.9 7.6 1.0
CB A:ASP283 3.9 5.3 1.0
CA A:ASP283 3.9 8.5 1.0
CA A:VAL305 3.9 7.7 1.0
CAX A:9P3402 4.0 11.0 1.0
OBD A:9P3402 4.0 11.8 1.0
C A:GLY285 4.2 9.8 1.0
O A:GLY284 4.2 12.0 1.0
NH1 A:ARG287 4.2 12.1 1.0
CA A:GLY285 4.3 10.4 1.0
O A:ILE286 4.3 10.1 1.0
N A:VAL305 4.4 8.0 1.0
N A:GLY306 4.4 9.8 1.0
C A:ILE286 4.6 9.6 1.0
C A:VAL305 4.7 9.7 1.0
CG2 A:ILE286 4.8 9.2 1.0
CD1 A:ILE286 4.9 10.4 1.0
CG2 A:VAL305 4.9 10.1 1.0
CB A:VAL305 4.9 8.4 1.0
CG A:ASP283 4.9 11.0 1.0
O A:ASP283 5.0 9.8 1.0

Reference:

T.L.Li, K.H.Lin. The Crystal Structure of Mandelate Oxidase with the Enoyl Fmn Epoxide Adduct To Be Published.
Page generated: Mon Dec 14 22:18:44 2020

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