Atomistry » Magnesium » PDB 6a1m-6aad » 6a2d
Atomistry »
  Magnesium »
    PDB 6a1m-6aad »
      6a2d »

Magnesium in PDB 6a2d: Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1

Protein crystallography data

The structure of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1, PDB code: 6a2d was solved by X.Han, T.P.Ko, W.D.Liu, Y.Y.Zheng, C.C.Chen, R.T.Guo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.96
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 132.527, 132.527, 141.903, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 22.5

Other elements in 6a2d:

The structure of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 (pdb code 6a2d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1, PDB code: 6a2d:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 6a2d

Go back to Magnesium Binding Sites List in 6a2d
Magnesium binding site 1 out of 4 in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg901

b:22.8
occ:1.00
OAE A:6R2900 2.0 22.7 1.0
O A:HOH1299 2.1 23.2 1.0
O A:HOH1107 2.1 27.3 1.0
OD1 A:ASP316 2.1 19.8 1.0
O A:HOH1099 2.1 23.3 1.0
OD1 A:ASP320 2.2 32.8 1.0
MG A:MG902 2.9 25.6 1.0
CG A:ASP320 3.0 38.3 1.0
CG A:ASP316 3.0 19.5 1.0
OD2 A:ASP320 3.1 74.2 1.0
PAY A:6R2900 3.2 31.9 1.0
OD2 A:ASP316 3.3 21.2 1.0
OAG A:6R2900 3.5 28.0 1.0
OE1 A:GLU394 4.0 36.0 1.0
O A:HOH1149 4.2 30.8 1.0
CLJ A:6R2900 4.3 33.2 1.0
OAH A:6R2900 4.3 32.4 1.0
CB A:ASP316 4.3 17.7 1.0
OAF A:6R2900 4.3 32.8 1.0
O A:HOH1021 4.4 32.5 1.0
CB A:ASP320 4.4 28.9 1.0
CAX A:6R2900 4.4 32.3 1.0
O A:ASP316 4.5 16.2 1.0
CE1 A:TYR391 4.5 21.2 1.0
CD1 A:TYR391 4.7 21.6 1.0
CA A:ASP316 4.8 16.5 1.0
C A:ASP316 5.0 17.0 1.0

Magnesium binding site 2 out of 4 in 6a2d

Go back to Magnesium Binding Sites List in 6a2d
Magnesium binding site 2 out of 4 in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:25.6
occ:1.00
OD1 A:ASP320 1.8 32.8 1.0
OAE A:6R2900 2.0 22.7 1.0
OAF A:6R2900 2.0 32.8 1.0
O A:HOH1149 2.1 30.8 1.0
OD2 A:ASP316 2.1 21.2 1.0
O A:HOH1194 2.3 21.0 1.0
MG A:MG901 2.9 22.8 1.0
CG A:ASP320 2.9 38.3 1.0
CG A:ASP316 3.0 19.5 1.0
OD1 A:ASP316 3.2 19.8 1.0
PAY A:6R2900 3.2 31.9 1.0
PAZ A:6R2900 3.4 28.9 1.0
CB A:ASP320 3.5 28.9 1.0
OAH A:6R2900 3.7 32.4 1.0
CAX A:6R2900 3.9 32.3 1.0
OD2 A:ASP320 4.0 74.2 1.0
O A:HOH1299 4.0 23.2 1.0
O A:HOH1456 4.1 40.1 1.0
O A:HOH1216 4.2 29.1 1.0
O A:ASP316 4.2 16.2 1.0
CB A:ASP316 4.3 17.7 1.0
CLJ A:6R2900 4.3 33.2 1.0
C A:ASP316 4.5 17.0 1.0
O A:HOH1099 4.5 23.3 1.0
OAI A:6R2900 4.5 33.3 1.0
OAT A:6R2900 4.5 35.9 1.0
OAG A:6R2900 4.6 28.0 1.0
OD1 A:ASP317 4.6 23.1 1.0
O A:HOH1107 4.7 27.3 1.0
N A:ASP317 4.9 17.4 1.0
CA A:ASP316 4.9 16.5 1.0
CA A:ASP320 5.0 24.1 1.0

Magnesium binding site 3 out of 4 in 6a2d

Go back to Magnesium Binding Sites List in 6a2d
Magnesium binding site 3 out of 4 in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg901

b:44.7
occ:1.00
OD2 B:ASP320 2.0 30.0 1.0
OAE B:6R2900 2.0 40.6 1.0
O B:HOH1016 2.0 32.4 1.0
O B:HOH1046 2.1 40.9 1.0
OD1 B:ASP316 2.2 36.5 1.0
O B:HOH1201 2.3 46.1 1.0
OD1 B:ASP320 2.4 30.0 1.0
CG B:ASP320 2.5 30.0 1.0
MG B:MG902 3.1 37.1 1.0
CG B:ASP316 3.1 31.2 1.0
PAY B:6R2900 3.4 49.2 1.0
OD2 B:ASP316 3.5 31.6 1.0
OE1 B:GLU394 3.6 76.1 1.0
OAG B:6R2900 3.9 48.2 1.0
CB B:ASP320 3.9 30.0 1.0
O B:HOH1099 4.0 45.5 1.0
OE2 B:GLU394 4.0 63.2 1.0
CD B:GLU394 4.3 68.8 1.0
O B:ASP316 4.3 36.0 1.0
OAH B:6R2900 4.4 47.6 1.0
CB B:ASP316 4.4 35.7 1.0
O B:HOH1095 4.5 46.1 1.0
CE1 B:TYR391 4.6 42.5 1.0
CLJ B:6R2900 4.7 46.8 1.0
OAF B:6R2900 4.7 39.5 1.0
CA B:ASP316 4.8 32.1 1.0
O B:HOH1049 4.8 38.4 1.0
C B:ASP316 4.8 36.3 1.0
CAX B:6R2900 4.8 52.5 1.0
CA B:ASP320 4.8 30.0 1.0
CD1 B:TYR391 4.9 43.2 1.0

Magnesium binding site 4 out of 4 in 6a2d

Go back to Magnesium Binding Sites List in 6a2d
Magnesium binding site 4 out of 4 in the Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Crystal Structure of A Synthase 2 From Santalum Album in Complex with LIGAND1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:37.1
occ:1.00
O B:HOH1095 2.0 46.1 1.0
OAF B:6R2900 2.0 39.5 1.0
OAE B:6R2900 2.0 40.6 1.0
OD2 B:ASP320 2.1 30.0 1.0
O B:HOH1099 2.1 45.5 1.0
OD2 B:ASP316 2.2 31.6 1.0
PAY B:6R2900 3.0 49.2 1.0
CG B:ASP316 3.0 31.2 1.0
MG B:MG901 3.1 44.7 1.0
OD1 B:ASP316 3.2 36.5 1.0
PAZ B:6R2900 3.2 50.9 1.0
CG B:ASP320 3.2 30.0 1.0
OAH B:6R2900 3.4 47.6 1.0
CAX B:6R2900 3.6 52.5 1.0
CB B:ASP320 3.9 30.0 1.0
CLJ B:6R2900 4.1 46.8 1.0
OAI B:6R2900 4.2 55.7 1.0
OD1 B:ASP320 4.2 30.0 1.0
O B:HOH1201 4.3 46.1 1.0
O B:HOH1046 4.4 40.9 1.0
OD1 B:ASP317 4.4 43.6 1.0
OAT B:6R2900 4.4 50.8 1.0
CB B:ASP316 4.4 35.7 1.0
OAG B:6R2900 4.5 48.2 1.0
O B:ASP316 4.7 36.0 1.0
C B:ASP316 4.8 36.3 1.0
O B:HOH1016 5.0 32.4 1.0

Reference:

X.Han, T.P.Ko, W.D.Liu, Y.Y.Zheng, C.C.Chen, R.T.Guo. Crystal Structure of A Synthase 2 From Santalum Album To Be Published.
Page generated: Mon Sep 30 18:56:30 2024

Last articles

Cl in 3OQG
Cl in 3OQ3
Cl in 3OQP
Cl in 3OQ2
Cl in 3OOX
Cl in 3OPQ
Cl in 3OP1
Cl in 3OP9
Cl in 3OOW
Cl in 3ON7
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy