Magnesium in PDB 6a2w: Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
Protein crystallography data
The structure of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum, PDB code: 6a2w
was solved by
W.Wang,
L.J.Yu,
T.Y.Kuang,
J.R.Shen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
19.98 /
1.80
|
|
Space group
|
C 2 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.749,
115.718,
141.261,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
17.5 /
19.7
|
Other elements in 6a2w:
The structure of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum also contains other interesting chemical elements:
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
(pdb code 6a2w). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 9 binding sites of Magnesium where determined in the
Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum, PDB code: 6a2w:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Magnesium binding site 1 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 1 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg401
b:34.8
occ:1.00
|
MG
|
A:CLA401
|
0.0
|
34.8
|
1.0
|
|
ND
|
A:CLA401
|
2.0
|
29.6
|
1.0
|
|
NB
|
A:CLA401
|
2.0
|
34.0
|
1.0
|
|
NC
|
A:CLA401
|
2.1
|
37.2
|
1.0
|
|
NA
|
A:CLA401
|
2.1
|
31.9
|
1.0
|
|
O
|
A:HOH517
|
2.2
|
34.6
|
1.0
|
|
C4D
|
A:CLA401
|
2.9
|
28.6
|
1.0
|
|
C1B
|
A:CLA401
|
3.0
|
34.1
|
1.0
|
|
C1C
|
A:CLA401
|
3.1
|
37.8
|
1.0
|
|
C4B
|
A:CLA401
|
3.1
|
31.5
|
1.0
|
|
C4A
|
A:CLA401
|
3.1
|
30.5
|
1.0
|
|
C1A
|
A:CLA401
|
3.1
|
29.9
|
1.0
|
|
C4C
|
A:CLA401
|
3.1
|
32.6
|
1.0
|
|
C1D
|
A:CLA401
|
3.2
|
29.1
|
1.0
|
|
CHC
|
A:CLA401
|
3.4
|
35.9
|
1.0
|
|
CHA
|
A:CLA401
|
3.4
|
27.9
|
1.0
|
|
CHB
|
A:CLA401
|
3.4
|
37.7
|
1.0
|
|
CHD
|
A:CLA401
|
3.6
|
28.4
|
1.0
|
|
C3D
|
A:CLA401
|
4.2
|
26.1
|
1.0
|
|
C2B
|
A:CLA401
|
4.3
|
37.7
|
1.0
|
|
C3B
|
A:CLA401
|
4.3
|
35.5
|
1.0
|
|
C2C
|
A:CLA401
|
4.3
|
38.7
|
1.0
|
|
O
|
A:PRO10
|
4.3
|
39.8
|
1.0
|
|
C3C
|
A:CLA401
|
4.3
|
36.2
|
1.0
|
|
C2D
|
A:CLA401
|
4.3
|
25.0
|
1.0
|
|
O2
|
A:A86301
|
4.4
|
34.9
|
1.0
|
|
C3A
|
A:CLA401
|
4.4
|
30.9
|
1.0
|
|
C2A
|
A:CLA401
|
4.4
|
28.4
|
1.0
|
|
NE2
|
A:GLN9
|
4.5
|
35.6
|
1.0
|
|
CD
|
A:PRO11
|
4.6
|
40.2
|
1.0
|
|
CBA
|
A:CLA401
|
4.7
|
37.0
|
1.0
|
|
CBD
|
A:CLA401
|
4.9
|
28.2
|
1.0
|
|
C19
|
A:A86301
|
4.9
|
26.8
|
1.0
|
|
Magnesium binding site 2 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 2 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:34.1
occ:1.00
|
MG
|
A:CLA402
|
0.0
|
34.1
|
1.0
|
|
ND
|
A:CLA402
|
2.0
|
34.6
|
1.0
|
|
NB
|
A:CLA402
|
2.0
|
33.2
|
1.0
|
|
OE2
|
A:GLU36
|
2.0
|
28.5
|
1.0
|
|
NA
|
A:CLA402
|
2.1
|
37.3
|
1.0
|
|
NC
|
A:CLA402
|
2.1
|
30.0
|
1.0
|
|
C4D
|
A:CLA402
|
2.9
|
33.8
|
1.0
|
|
C1B
|
A:CLA402
|
3.0
|
33.9
|
1.0
|
|
C4A
|
A:CLA402
|
3.0
|
33.1
|
1.0
|
|
CD
|
A:GLU36
|
3.1
|
30.0
|
1.0
|
|
C4B
|
A:CLA402
|
3.1
|
27.9
|
1.0
|
|
C1C
|
A:CLA402
|
3.1
|
26.7
|
1.0
|
|
C1D
|
A:CLA402
|
3.1
|
35.6
|
1.0
|
|
C1A
|
A:CLA402
|
3.1
|
34.9
|
1.0
|
|
C4C
|
A:CLA402
|
3.1
|
28.6
|
1.0
|
|
CHB
|
A:CLA402
|
3.4
|
33.0
|
1.0
|
|
CHC
|
A:CLA402
|
3.4
|
26.0
|
1.0
|
|
CHA
|
A:CLA402
|
3.5
|
34.6
|
1.0
|
|
CHD
|
A:CLA402
|
3.5
|
33.5
|
1.0
|
|
O2A
|
A:CLA402
|
3.8
|
61.0
|
1.0
|
|
OE1
|
A:GLU36
|
3.9
|
28.7
|
1.0
|
|
CG
|
A:GLU36
|
3.9
|
26.1
|
1.0
|
|
C1
|
A:CLA402
|
4.0
|
57.9
|
1.0
|
|
NE
|
A:ARG145
|
4.1
|
27.2
|
1.0
|
|
NH2
|
A:ARG145
|
4.1
|
30.1
|
1.0
|
|
C3D
|
A:CLA402
|
4.2
|
37.5
|
1.0
|
|
C2B
|
A:CLA402
|
4.3
|
31.5
|
1.0
|
|
C3B
|
A:CLA402
|
4.3
|
28.1
|
1.0
|
|
C2D
|
A:CLA402
|
4.3
|
35.6
|
1.0
|
|
C2C
|
A:CLA402
|
4.4
|
25.9
|
1.0
|
|
C3C
|
A:CLA402
|
4.4
|
31.3
|
1.0
|
|
C3A
|
A:CLA402
|
4.4
|
33.7
|
1.0
|
|
CZ
|
A:ARG145
|
4.4
|
28.9
|
1.0
|
|
C2A
|
A:CLA402
|
4.5
|
37.5
|
1.0
|
|
C37
|
A:A86303
|
4.5
|
40.7
|
1.0
|
|
O
|
A:HOH505
|
4.6
|
56.3
|
1.0
|
|
CGA
|
A:CLA402
|
4.8
|
55.9
|
1.0
|
|
CBA
|
A:CLA402
|
4.9
|
47.1
|
1.0
|
|
CBD
|
A:CLA402
|
4.9
|
37.5
|
1.0
|
|
CB
|
A:GLU36
|
4.9
|
26.8
|
1.0
|
|
Magnesium binding site 3 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 3 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:30.9
occ:1.00
|
MG
|
A:KC2403
|
0.0
|
30.9
|
1.0
|
|
NC
|
A:KC2403
|
2.0
|
29.7
|
1.0
|
|
NB
|
A:KC2403
|
2.1
|
31.7
|
1.0
|
|
ND
|
A:KC2403
|
2.1
|
29.9
|
1.0
|
|
NA
|
A:KC2403
|
2.1
|
32.1
|
1.0
|
|
NE2
|
A:HIS39
|
2.2
|
27.1
|
1.0
|
|
C4D
|
A:KC2403
|
2.9
|
29.1
|
1.0
|
|
C4C
|
A:KC2403
|
3.0
|
25.9
|
1.0
|
|
C1B
|
A:KC2403
|
3.0
|
30.5
|
1.0
|
|
CE1
|
A:HIS39
|
3.0
|
25.1
|
1.0
|
|
C4B
|
A:KC2403
|
3.1
|
27.4
|
1.0
|
|
C4A
|
A:KC2403
|
3.1
|
31.8
|
1.0
|
|
C1D
|
A:KC2403
|
3.2
|
26.4
|
1.0
|
|
C1C
|
A:KC2403
|
3.2
|
28.9
|
1.0
|
|
C1A
|
A:KC2403
|
3.2
|
30.4
|
1.0
|
|
CD2
|
A:HIS39
|
3.3
|
24.1
|
1.0
|
|
CHD
|
A:KC2403
|
3.5
|
26.0
|
1.0
|
|
CHA
|
A:KC2403
|
3.6
|
32.8
|
1.0
|
|
CHB
|
A:KC2403
|
3.6
|
30.1
|
1.0
|
|
CHC
|
A:KC2403
|
3.6
|
27.9
|
1.0
|
|
C9
|
A:CLA406
|
3.8
|
48.4
|
1.0
|
|
C8
|
A:CLA406
|
4.0
|
50.1
|
1.0
|
|
ND1
|
A:HIS39
|
4.2
|
26.1
|
1.0
|
|
C3D
|
A:KC2403
|
4.2
|
28.8
|
1.0
|
|
C2B
|
A:KC2403
|
4.3
|
30.2
|
1.0
|
|
C3C
|
A:KC2403
|
4.4
|
28.7
|
1.0
|
|
C3B
|
A:KC2403
|
4.4
|
30.9
|
1.0
|
|
C2D
|
A:KC2403
|
4.4
|
28.5
|
1.0
|
|
CG
|
A:HIS39
|
4.4
|
22.0
|
1.0
|
|
C3A
|
A:KC2403
|
4.4
|
33.0
|
1.0
|
|
C2C
|
A:KC2403
|
4.4
|
26.6
|
1.0
|
|
C2A
|
A:KC2403
|
4.5
|
32.3
|
1.0
|
|
C10
|
A:CLA406
|
4.5
|
51.4
|
1.0
|
|
CMD
|
A:CLA406
|
4.7
|
22.0
|
1.0
|
|
CBD
|
A:KC2403
|
5.0
|
38.5
|
1.0
|
|
OBD
|
A:CLA406
|
5.0
|
29.1
|
1.0
|
|
CBB
|
A:CLA402
|
5.0
|
26.9
|
1.0
|
|
Magnesium binding site 4 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 4 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:21.9
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
21.9
|
1.0
|
|
ND
|
A:CLA404
|
2.0
|
22.0
|
1.0
|
|
NB
|
A:CLA404
|
2.0
|
20.2
|
1.0
|
|
NC
|
A:CLA404
|
2.1
|
20.2
|
1.0
|
|
NA
|
A:CLA404
|
2.1
|
21.1
|
1.0
|
|
OE1
|
A:GLN53
|
2.1
|
22.8
|
1.0
|
|
C4D
|
A:CLA404
|
2.9
|
22.5
|
1.0
|
|
C1B
|
A:CLA404
|
3.0
|
26.9
|
1.0
|
|
C4A
|
A:CLA404
|
3.0
|
20.3
|
1.0
|
|
C4B
|
A:CLA404
|
3.1
|
18.2
|
1.0
|
|
C4C
|
A:CLA404
|
3.1
|
21.6
|
1.0
|
|
C1C
|
A:CLA404
|
3.1
|
19.4
|
1.0
|
|
C1D
|
A:CLA404
|
3.1
|
26.1
|
1.0
|
|
C1A
|
A:CLA404
|
3.2
|
21.2
|
1.0
|
|
CD
|
A:GLN53
|
3.3
|
22.5
|
1.0
|
|
CHB
|
A:CLA404
|
3.4
|
22.0
|
1.0
|
|
CHA
|
A:CLA404
|
3.5
|
24.5
|
1.0
|
|
CHD
|
A:CLA404
|
3.5
|
21.9
|
1.0
|
|
CHC
|
A:CLA404
|
3.5
|
19.5
|
1.0
|
|
C2
|
A:CLA404
|
3.9
|
26.1
|
1.0
|
|
CG
|
A:GLN53
|
4.1
|
20.9
|
1.0
|
|
C3D
|
A:CLA404
|
4.2
|
26.3
|
1.0
|
|
O2A
|
A:CLA404
|
4.2
|
25.3
|
1.0
|
|
C3
|
A:CLA404
|
4.3
|
26.0
|
1.0
|
|
C2D
|
A:CLA404
|
4.3
|
26.1
|
1.0
|
|
NE2
|
A:GLN53
|
4.3
|
22.7
|
1.0
|
|
C1
|
A:CLA404
|
4.3
|
26.3
|
1.0
|
|
C3B
|
A:CLA404
|
4.3
|
20.9
|
1.0
|
|
C2B
|
A:CLA404
|
4.3
|
22.5
|
1.0
|
|
C3C
|
A:CLA404
|
4.3
|
23.1
|
1.0
|
|
C2C
|
A:CLA404
|
4.4
|
20.0
|
1.0
|
|
C3A
|
A:CLA404
|
4.4
|
22.3
|
1.0
|
|
C2A
|
A:CLA404
|
4.5
|
23.3
|
1.0
|
|
C5
|
A:CLA404
|
4.7
|
24.8
|
1.0
|
|
CA
|
A:GLY49
|
4.7
|
17.4
|
1.0
|
|
C6
|
A:CLA404
|
4.8
|
24.4
|
1.0
|
|
CBD
|
A:CLA404
|
4.9
|
29.6
|
1.0
|
|
CGA
|
A:CLA404
|
5.0
|
28.2
|
1.0
|
|
O
|
A:GLY49
|
5.0
|
23.7
|
1.0
|
|
Magnesium binding site 5 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 5 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:43.4
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
43.4
|
1.0
|
|
NB
|
A:CLA405
|
2.0
|
47.4
|
1.0
|
|
ND
|
A:CLA405
|
2.0
|
35.6
|
1.0
|
|
NC
|
A:CLA405
|
2.1
|
39.8
|
1.0
|
|
NA
|
A:CLA405
|
2.1
|
47.6
|
1.0
|
|
OE1
|
A:GLN90
|
2.2
|
32.4
|
1.0
|
|
C4D
|
A:CLA405
|
2.9
|
31.6
|
1.0
|
|
C1B
|
A:CLA405
|
3.0
|
50.6
|
1.0
|
|
C4A
|
A:CLA405
|
3.0
|
53.1
|
1.0
|
|
C4B
|
A:CLA405
|
3.1
|
46.2
|
1.0
|
|
C1C
|
A:CLA405
|
3.1
|
41.5
|
1.0
|
|
C1D
|
A:CLA405
|
3.1
|
35.8
|
1.0
|
|
C4C
|
A:CLA405
|
3.1
|
36.8
|
1.0
|
|
C1A
|
A:CLA405
|
3.2
|
45.3
|
1.0
|
|
CD
|
A:GLN90
|
3.3
|
33.7
|
1.0
|
|
CHB
|
A:CLA405
|
3.4
|
55.7
|
1.0
|
|
CHC
|
A:CLA405
|
3.4
|
45.2
|
1.0
|
|
CHA
|
A:CLA405
|
3.5
|
38.7
|
1.0
|
|
CHD
|
A:CLA405
|
3.5
|
38.3
|
1.0
|
|
NE2
|
A:GLN90
|
3.8
|
33.9
|
1.0
|
|
C28
|
A:A86302
|
3.8
|
36.1
|
1.0
|
|
C3D
|
A:CLA405
|
4.2
|
34.2
|
1.0
|
|
C2B
|
A:CLA405
|
4.3
|
51.1
|
1.0
|
|
C3B
|
A:CLA405
|
4.3
|
50.7
|
1.0
|
|
C2C
|
A:CLA405
|
4.3
|
40.2
|
1.0
|
|
C2D
|
A:CLA405
|
4.3
|
35.0
|
1.0
|
|
C3C
|
A:CLA405
|
4.4
|
40.8
|
1.0
|
|
C3A
|
A:CLA405
|
4.4
|
51.5
|
1.0
|
|
C2A
|
A:CLA405
|
4.5
|
49.1
|
1.0
|
|
CG
|
A:GLN90
|
4.6
|
27.6
|
1.0
|
|
C27
|
A:A86302
|
4.7
|
35.1
|
1.0
|
|
CB
|
A:GLN90
|
4.9
|
24.6
|
1.0
|
|
C24
|
A:DD6308
|
4.9
|
73.2
|
1.0
|
|
CBD
|
A:CLA405
|
4.9
|
41.1
|
1.0
|
|
C25
|
A:A86302
|
5.0
|
31.3
|
1.0
|
|
C26
|
A:DD6308
|
5.0
|
70.6
|
1.0
|
|
Magnesium binding site 6 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 6 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:26.3
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
26.3
|
1.0
|
|
ND
|
A:CLA406
|
2.0
|
23.3
|
1.0
|
|
NB
|
A:CLA406
|
2.0
|
20.9
|
1.0
|
|
NA
|
A:CLA406
|
2.1
|
23.1
|
1.0
|
|
NC
|
A:CLA406
|
2.1
|
26.1
|
1.0
|
|
OE2
|
A:GLU99
|
2.1
|
29.8
|
1.0
|
|
C4D
|
A:CLA406
|
2.9
|
27.0
|
1.0
|
|
C1B
|
A:CLA406
|
3.0
|
27.8
|
1.0
|
|
C4A
|
A:CLA406
|
3.1
|
27.1
|
1.0
|
|
C4B
|
A:CLA406
|
3.1
|
23.7
|
1.0
|
|
C1C
|
A:CLA406
|
3.1
|
23.5
|
1.0
|
|
C1A
|
A:CLA406
|
3.1
|
27.1
|
1.0
|
|
C1D
|
A:CLA406
|
3.1
|
21.9
|
1.0
|
|
C4C
|
A:CLA406
|
3.2
|
23.5
|
1.0
|
|
CD
|
A:GLU99
|
3.2
|
31.1
|
1.0
|
|
CHA
|
A:CLA406
|
3.4
|
26.2
|
1.0
|
|
CHB
|
A:CLA406
|
3.4
|
29.1
|
1.0
|
|
CHC
|
A:CLA406
|
3.5
|
22.8
|
1.0
|
|
CHD
|
A:CLA406
|
3.5
|
19.7
|
1.0
|
|
CG
|
A:GLU99
|
3.8
|
28.1
|
1.0
|
|
C3D
|
A:CLA406
|
4.2
|
24.4
|
1.0
|
|
OE1
|
A:GLU99
|
4.2
|
34.2
|
1.0
|
|
C2B
|
A:CLA406
|
4.3
|
28.3
|
1.0
|
|
C2D
|
A:CLA406
|
4.3
|
25.3
|
1.0
|
|
C3B
|
A:CLA406
|
4.3
|
25.9
|
1.0
|
|
NZ
|
A:LYS38
|
4.3
|
22.9
|
1.0
|
|
C2C
|
A:CLA406
|
4.4
|
28.7
|
1.0
|
|
C3A
|
A:CLA406
|
4.4
|
29.0
|
1.0
|
|
C3C
|
A:CLA406
|
4.4
|
22.7
|
1.0
|
|
C2A
|
A:CLA406
|
4.4
|
28.7
|
1.0
|
|
CE
|
A:LYS38
|
4.5
|
25.8
|
1.0
|
|
CMD
|
A:KC2403
|
4.6
|
28.4
|
1.0
|
|
CBD
|
A:CLA406
|
4.9
|
25.5
|
1.0
|
|
CB
|
A:GLU99
|
4.9
|
25.9
|
1.0
|
|
Magnesium binding site 7 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 7 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:21.7
occ:1.00
|
MG
|
A:CLA407
|
0.0
|
21.7
|
1.0
|
|
ND
|
A:CLA407
|
2.0
|
22.0
|
1.0
|
|
NB
|
A:CLA407
|
2.0
|
21.5
|
1.0
|
|
NC
|
A:CLA407
|
2.1
|
19.9
|
1.0
|
|
NA
|
A:CLA407
|
2.1
|
25.1
|
1.0
|
|
OE2
|
A:GLU140
|
2.1
|
21.7
|
1.0
|
|
C4D
|
A:CLA407
|
2.9
|
24.3
|
1.0
|
|
C1B
|
A:CLA407
|
3.0
|
21.9
|
1.0
|
|
C4B
|
A:CLA407
|
3.0
|
20.2
|
1.0
|
|
C4A
|
A:CLA407
|
3.1
|
25.6
|
1.0
|
|
C1C
|
A:CLA407
|
3.1
|
16.4
|
1.0
|
|
C4C
|
A:CLA407
|
3.1
|
21.1
|
1.0
|
|
C1A
|
A:CLA407
|
3.2
|
22.7
|
1.0
|
|
C1D
|
A:CLA407
|
3.2
|
21.2
|
1.0
|
|
CD
|
A:GLU140
|
3.2
|
26.4
|
1.0
|
|
CHB
|
A:CLA407
|
3.4
|
23.2
|
1.0
|
|
CHA
|
A:CLA407
|
3.4
|
22.2
|
1.0
|
|
CHC
|
A:CLA407
|
3.4
|
17.6
|
1.0
|
|
CHD
|
A:CLA407
|
3.5
|
20.4
|
1.0
|
|
CG
|
A:GLU140
|
3.8
|
21.1
|
1.0
|
|
C26
|
A:A86304
|
3.8
|
26.4
|
1.0
|
|
C29
|
A:A86304
|
4.1
|
26.0
|
1.0
|
|
OE1
|
A:GLU140
|
4.2
|
24.6
|
1.0
|
|
NE
|
A:ARG41
|
4.2
|
19.8
|
1.0
|
|
C3D
|
A:CLA407
|
4.2
|
22.3
|
1.0
|
|
NH2
|
A:ARG41
|
4.3
|
25.6
|
1.0
|
|
C3B
|
A:CLA407
|
4.3
|
15.5
|
1.0
|
|
C2B
|
A:CLA407
|
4.3
|
18.1
|
1.0
|
|
C2C
|
A:CLA407
|
4.3
|
16.0
|
1.0
|
|
C2D
|
A:CLA407
|
4.3
|
20.6
|
1.0
|
|
C3C
|
A:CLA407
|
4.3
|
17.9
|
1.0
|
|
C3A
|
A:CLA407
|
4.4
|
24.9
|
1.0
|
|
C27
|
A:A86304
|
4.4
|
27.4
|
1.0
|
|
C2A
|
A:CLA407
|
4.5
|
23.6
|
1.0
|
|
CB
|
A:GLU140
|
4.6
|
24.0
|
1.0
|
|
CZ
|
A:ARG41
|
4.7
|
23.9
|
1.0
|
|
C25
|
A:A86304
|
4.8
|
26.2
|
1.0
|
|
C24
|
A:A86304
|
4.9
|
22.7
|
1.0
|
|
CBD
|
A:CLA407
|
4.9
|
23.1
|
1.0
|
|
CMA
|
A:CLA407
|
5.0
|
27.3
|
1.0
|
|
Magnesium binding site 8 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 8 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg408
b:25.0
occ:1.00
|
MG
|
A:KC1408
|
0.0
|
25.0
|
1.0
|
|
NA
|
A:KC1408
|
2.0
|
22.0
|
1.0
|
|
NC
|
A:KC1408
|
2.0
|
26.6
|
1.0
|
|
NB
|
A:KC1408
|
2.0
|
24.2
|
1.0
|
|
ND
|
A:KC1408
|
2.1
|
23.9
|
1.0
|
|
OE1
|
A:GLN143
|
2.2
|
23.8
|
1.0
|
|
C4D
|
A:KC1408
|
2.9
|
24.2
|
1.0
|
|
C4C
|
A:KC1408
|
3.0
|
21.4
|
1.0
|
|
C1B
|
A:KC1408
|
3.0
|
24.0
|
1.0
|
|
C4B
|
A:KC1408
|
3.0
|
21.9
|
1.0
|
|
C4A
|
A:KC1408
|
3.0
|
24.2
|
1.0
|
|
CD
|
A:GLN143
|
3.1
|
23.8
|
1.0
|
|
C1A
|
A:KC1408
|
3.1
|
20.3
|
1.0
|
|
C1D
|
A:KC1408
|
3.2
|
24.9
|
1.0
|
|
C1C
|
A:KC1408
|
3.2
|
23.7
|
1.0
|
|
CHA
|
A:KC1408
|
3.5
|
23.8
|
1.0
|
|
CHD
|
A:KC1408
|
3.6
|
23.5
|
1.0
|
|
NE2
|
A:GLN143
|
3.6
|
24.9
|
1.0
|
|
CHB
|
A:KC1408
|
3.6
|
24.1
|
1.0
|
|
CHC
|
A:KC1408
|
3.6
|
21.6
|
1.0
|
|
C3D
|
A:KC1408
|
4.2
|
22.8
|
1.0
|
|
C3B
|
A:KC1408
|
4.3
|
22.8
|
1.0
|
|
C2B
|
A:KC1408
|
4.3
|
24.1
|
1.0
|
|
CG
|
A:GLN143
|
4.3
|
18.8
|
1.0
|
|
C3A
|
A:KC1408
|
4.3
|
23.7
|
1.0
|
|
C3C
|
A:KC1408
|
4.4
|
23.6
|
1.0
|
|
C2D
|
A:KC1408
|
4.4
|
22.5
|
1.0
|
|
C2A
|
A:KC1408
|
4.4
|
26.1
|
1.0
|
|
C2C
|
A:KC1408
|
4.4
|
25.9
|
1.0
|
|
C7
|
A:A86305
|
4.5
|
23.8
|
1.0
|
|
CBD
|
A:KC1408
|
4.9
|
26.2
|
1.0
|
|
Magnesium binding site 9 out
of 9 in 6a2w
Go back to
Magnesium Binding Sites List in 6a2w
Magnesium binding site 9 out
of 9 in the Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Crystal Structure of Fucoxanthin Chlorophyll A/C Complex From Phaeodactylum Tricornutum within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg409
b:41.4
occ:1.00
|
MG
|
A:CLA409
|
0.0
|
41.4
|
1.0
|
|
NB
|
A:CLA409
|
2.0
|
36.5
|
1.0
|
|
ND
|
A:CLA409
|
2.0
|
47.6
|
1.0
|
|
NC
|
A:CLA409
|
2.1
|
37.8
|
1.0
|
|
NA
|
A:CLA409
|
2.1
|
46.0
|
1.0
|
|
NE2
|
A:HIS157
|
2.2
|
34.0
|
1.0
|
|
C4D
|
A:CLA409
|
2.9
|
50.1
|
1.0
|
|
C1B
|
A:CLA409
|
3.0
|
38.8
|
1.0
|
|
C4A
|
A:CLA409
|
3.1
|
44.2
|
1.0
|
|
C4B
|
A:CLA409
|
3.1
|
35.6
|
1.0
|
|
C1C
|
A:CLA409
|
3.1
|
35.5
|
1.0
|
|
CE1
|
A:HIS157
|
3.1
|
36.0
|
1.0
|
|
C4C
|
A:CLA409
|
3.1
|
35.3
|
1.0
|
|
C1D
|
A:CLA409
|
3.1
|
46.8
|
1.0
|
|
C1A
|
A:CLA409
|
3.2
|
51.2
|
1.0
|
|
CD2
|
A:HIS157
|
3.3
|
33.4
|
1.0
|
|
CHB
|
A:CLA409
|
3.4
|
41.6
|
1.0
|
|
CHC
|
A:CLA409
|
3.4
|
34.9
|
1.0
|
|
CHA
|
A:CLA409
|
3.5
|
53.6
|
1.0
|
|
CHD
|
A:CLA409
|
3.5
|
44.7
|
1.0
|
|
C4'
|
A:SOG413
|
4.1
|
57.6
|
1.0
|
|
C3'
|
A:SOG413
|
4.2
|
66.1
|
1.0
|
|
C5'
|
A:SOG413
|
4.2
|
53.4
|
1.0
|
|
C3D
|
A:CLA409
|
4.2
|
52.2
|
1.0
|
|
ND1
|
A:HIS157
|
4.3
|
32.3
|
1.0
|
|
C2B
|
A:CLA409
|
4.3
|
36.6
|
1.0
|
|
C3B
|
A:CLA409
|
4.3
|
35.9
|
1.0
|
|
C2C
|
A:CLA409
|
4.3
|
34.4
|
1.0
|
|
C2D
|
A:CLA409
|
4.3
|
48.6
|
1.0
|
|
C3C
|
A:CLA409
|
4.4
|
35.4
|
1.0
|
|
CG
|
A:HIS157
|
4.4
|
31.8
|
1.0
|
|
C3A
|
A:CLA409
|
4.4
|
50.9
|
1.0
|
|
C2A
|
A:CLA409
|
4.5
|
54.5
|
1.0
|
|
C24
|
A:A86301
|
4.6
|
48.1
|
1.0
|
|
C2'
|
A:SOG413
|
4.9
|
75.6
|
1.0
|
|
CBD
|
A:CLA409
|
4.9
|
58.8
|
1.0
|
|
C2
|
A:A86301
|
4.9
|
44.0
|
1.0
|
|
Reference:
W.Wang,
L.J.Yu,
C.Xu,
T.Tomizaki,
S.Zhao,
Y.Umena,
X.Chen,
X.Qin,
Y.Xin,
M.Suga,
G.Han,
T.Kuang,
J.R.Shen.
Structural Basis For Blue-Green Light Harvesting and Energy Dissipation in Diatoms. Science V. 363 2019.
ISSN: ESSN 1095-9203
PubMed: 30733387
DOI: 10.1126/SCIENCE.AAV0365
Page generated: Mon Sep 30 18:56:28 2024
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