Magnesium in PDB 6akp: Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter

The structure of Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter, PDB code: 6akp was solved by X.Chen, H.Wei, J.Li, X.Liang, S.Dai, L.Jiang, M.Guo, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.28 / 2.32
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	41.837, 80.214, 101.154, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 24.7

The binding sites of Magnesium atom in the Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter (pdb code 6akp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter, PDB code: 6akp:

Magnesium binding site 1 out of 1 in the Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structural of FOXC2 Dna Binding Domain Bound to Pc Promoter within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg200 b:82.6 occ:1.00 O C:LEU124 2.5 71.5 1.0 O C:ASN127 2.5 70.0 1.0 O C:PHE130 2.6 67.2 1.0 O C:SER125 3.2 74.5 1.0 C C:SER125 3.6 71.2 1.0 C C:ASN127 3.6 71.2 1.0 C C:LEU124 3.6 68.6 1.0 CA C:SER125 3.8 71.2 1.0 C C:PHE130 3.8 65.4 1.0 O C:HOH312 4.0 66.6 1.0 N C:SER125 4.2 67.1 1.0 CA C:GLU128 4.3 74.8 1.0 N C:GLU128 4.3 71.3 1.0 N C:ASN127 4.4 74.0 1.0 CZ3 C:TRP146 4.4 64.7 1.0 C C:LEU126 4.4 68.3 1.0 N C:LEU126 4.5 72.1 1.0 O C:GLU128 4.5 71.7 1.0 C C:GLU128 4.5 67.3 1.0 O C:LEU126 4.5 72.0 1.0 N C:PHE130 4.5 57.5 1.0 CA C:PHE130 4.6 63.7 1.0 CA C:ASN127 4.6 71.7 1.0 CB C:PHE130 4.6 60.1 1.0 N C:VAL131 4.8 59.2 1.0 CA C:LEU124 4.9 62.8 1.0 CH2 C:TRP146 5.0 67.2 1.0

X.Chen, H.Wei, J.Li, X.Liang, S.Dai, L.Jiang, M.Guo, L.Qu, Z.Chen, L.Chen, Y.Chen. Structural Basis For Dna Recognition By FOXC2. Nucleic Acids Res. V. 47 3752 2019.
ISSN: ESSN 1362-4962
PubMed: 30722065
DOI: 10.1093/NAR/GKZ077