Magnesium in PDB 6b0c: KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule

The binding sites of Magnesium atom in the KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule (pdb code 6b0c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule, PDB code: 6b0c:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:28.0 occ:1.00 O3G A:GTP501 1.9 0.6 1.0 O1B A:GTP501 1.9 0.6 1.0 PB A:GTP501 2.9 0.6 1.0 OE2 A:GLU71 2.9 0.4 1.0 PG A:GTP501 3.0 0.6 1.0 O3B A:GTP501 3.0 0.6 1.0 CD A:GLU71 3.3 0.4 1.0 OE1 A:GLU71 3.4 0.4 1.0 NZ B:LYS252 3.7 0.5 1.0 O2B A:GTP501 3.8 0.6 1.0 O1G A:GTP501 3.9 0.6 1.0 O2G A:GTP501 4.1 0.6 1.0 O3A A:GTP501 4.2 0.6 1.0 CG A:GLU71 4.3 0.4 1.0 OE1 A:GLN11 4.4 0.9 1.0 CB A:GLN11 4.5 0.9 1.0 CE B:LYS252 4.8 0.5 1.0 O2A A:GTP501 4.8 0.6 1.0

Magnesium binding site 2 out of 3 in the KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:49.5 occ:1.00 O1G C:GTP501 2.1 60.5 1.0 OE1 C:GLU71 2.3 49.6 1.0 O2B C:GTP501 3.4 60.5 1.0 CD C:GLU71 3.4 49.6 1.0 PG C:GTP501 3.5 60.5 1.0 OE1 C:GLN11 3.8 49.7 1.0 CB C:GLN11 3.9 49.7 1.0 CB C:GLU71 3.9 49.6 1.0 OD2 C:ASP98 4.0 49.7 1.0 NZ D:LYS252 4.0 42.9 1.0 O2G C:GTP501 4.1 60.5 1.0 OD2 C:ASP69 4.2 49.9 1.0 CB C:ASP98 4.2 49.7 1.0 PB C:GTP501 4.2 60.5 1.0 OE2 C:GLU71 4.3 49.6 1.0 O3B C:GTP501 4.3 60.5 1.0 OD1 C:ASP69 4.3 49.9 1.0 CG C:GLU71 4.3 49.6 1.0 O3A C:GTP501 4.4 60.5 1.0 O3G C:GTP501 4.5 60.5 1.0 CD C:GLN11 4.6 49.7 1.0 CG C:ASP98 4.6 49.7 1.0 N C:GLN11 4.6 49.7 1.0 CG2 C:VAL74 4.6 47.5 1.0 CG C:ASP69 4.7 49.9 1.0 ND2 D:ASN247 4.7 48.6 1.0 CG C:GLN11 4.8 49.7 1.0 CA C:GLN11 4.8 49.7 1.0 CB D:ASN247 4.8 48.6 1.0 CE D:LYS252 4.9 42.9 1.0

Magnesium binding site 3 out of 3 in the KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of KLP10A-Amppnp in Complex with Curved Tubulin and A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg701 b:0.8 occ:1.00 O3G K:ANP702 2.1 0.6 1.0 OG K:SER488 2.1 0.3 1.0 O2B K:ANP702 2.5 0.6 1.0 CB K:THR375 2.6 0.5 1.0 CG2 K:THR375 2.6 0.5 1.0 O1G K:ANP702 2.8 0.6 1.0 PG K:ANP702 2.9 0.6 1.0 N K:THR375 3.2 0.5 1.0 CB K:SER488 3.2 0.3 1.0 CA K:THR375 3.4 0.5 1.0 OG1 K:THR375 3.7 0.5 1.0 PB K:ANP702 3.8 0.6 1.0 N3B K:ANP702 4.0 0.6 1.0 OD2 K:ASP514 4.1 0.6 1.0 N K:SER488 4.1 0.3 1.0 O2G K:ANP702 4.1 0.6 1.0 CA K:SER488 4.2 0.3 1.0 C K:LYS374 4.3 0.8 1.0 OD1 K:ASP514 4.3 0.6 1.0 CB K:LYS374 4.4 0.8 1.0 O2A K:ANP702 4.4 0.6 1.0 O1A K:ANP702 4.5 0.6 1.0 O1B K:ANP702 4.6 0.6 1.0 C K:THR375 4.6 0.5 1.0 CG K:ASP514 4.6 0.6 1.0 CA K:LYS374 4.8 0.8 1.0 O K:LEU515 4.8 0.7 1.0 PA K:ANP702 4.8 0.6 1.0 O3A K:ANP702 4.9 0.6 1.0 NH2 K:ARG476 4.9 0.1 1.0 N K:LYS374 4.9 0.8 1.0 CE K:LYS374 5.0 0.8 1.0

M.P.M.H.Benoit, A.B.Asenjo, H.Sosa. Cryo-Em Reveals the Structural Basis of Microtubule Depolymerization By Kinesin-13S. Nat Commun V. 9 1662 2018.
ISSN: ESSN 2041-1723
PubMed: 29695795
DOI: 10.1038/S41467-018-04044-8