Magnesium in PDB 6b0l: KLP10A-Amppnp in Complex with A Microtubule

The binding sites of Magnesium atom in the KLP10A-Amppnp in Complex with A Microtubule (pdb code 6b0l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the KLP10A-Amppnp in Complex with A Microtubule, PDB code: 6b0l:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the KLP10A-Amppnp in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of KLP10A-Amppnp in Complex with A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:28.0 occ:1.00 O2G A:GTP501 2.1 22.5 1.0 O2B A:GTP501 2.1 21.6 1.0 OE1 A:GLN11 2.2 0.0 1.0 PG A:GTP501 3.2 24.0 1.0 CB A:GLN11 3.2 0.0 1.0 PB A:GTP501 3.2 24.8 1.0 OD1 A:ASP98 3.3 0.6 1.0 CD A:GLN11 3.3 0.0 1.0 O3B A:GTP501 3.5 24.8 1.0 O1G A:GTP501 3.6 28.5 1.0 CG A:GLN11 3.8 0.0 1.0 O3A A:GTP501 3.8 26.8 1.0 CG A:ASP98 4.1 0.6 1.0 OD2 A:ASP98 4.1 0.6 1.0 N A:GLN11 4.3 0.0 1.0 CA A:GLN11 4.4 0.0 1.0 O3G A:GTP501 4.4 22.9 1.0 NE2 A:GLN11 4.4 0.0 1.0 O1B A:GTP501 4.5 26.1 1.0 O2A A:GTP501 4.6 28.6 1.0 NZ B:LYS252 4.6 0.2 1.0 OD1 B:ASN247 4.7 0.1 1.0 PA A:GTP501 4.7 25.9 1.0 O A:ASP69 4.8 0.1 1.0

Magnesium binding site 2 out of 2 in the KLP10A-Amppnp in Complex with A Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of KLP10A-Amppnp in Complex with A Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg701 b:7.4 occ:1.00 O2G K:ANP702 2.0 6.3 1.0 O2B K:ANP702 2.0 6.2 1.0 PG K:ANP702 3.2 6.8 1.0 PB K:ANP702 3.3 6.8 1.0 CG2 K:THR375 3.5 0.3 1.0 N3B K:ANP702 3.5 6.6 1.0 OG1 K:THR375 3.5 0.3 1.0 O3G K:ANP702 4.0 6.4 1.0 CB K:THR375 4.0 0.3 1.0 O1A K:ANP702 4.1 7.1 1.0 O3A K:ANP702 4.2 6.8 1.0 OG K:SER485 4.3 0.4 1.0 O1G K:ANP702 4.4 6.4 1.0 O1B K:ANP702 4.4 6.5 1.0 PA K:ANP702 4.5 7.3 1.0 O2A K:ANP702 4.7 7.3 1.0 CB K:SER485 5.0 0.4 1.0

M.P.M.H.Benoit, A.B.Asenjo, H.Sosa. Cryo-Em Reveals the Structural Basis of Microtubule Depolymerization By Kinesin-13S. Nat Commun V. 9 1662 2018.
ISSN: ESSN 2041-1723
PubMed: 29695795
DOI: 10.1038/S41467-018-04044-8