Magnesium in PDB 6bjc: TPX2_MINI Decorated Gmpcpp-Microtubule

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Magnesium atom in the TPX2_MINI Decorated Gmpcpp-Microtubule (pdb code 6bjc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the TPX2_MINI Decorated Gmpcpp-Microtubule, PDB code: 6bjc:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:12.4 occ:1.00 O1B A:GTP501 2.1 12.8 1.0 O1G A:GTP501 2.3 12.9 1.0 PB A:GTP501 3.3 12.7 1.0 PG A:GTP501 3.4 12.9 1.0 O3B A:GTP501 3.8 12.8 1.0 O2G A:GTP501 3.8 13.0 1.0 O3A A:GTP501 3.9 12.8 1.0 OE1 A:GLU71 4.0 25.8 1.0 CB A:GLN11 4.2 14.6 1.0 OE1 A:GLN11 4.2 14.9 1.0 OD1 A:ASP69 4.2 19.2 1.0 OD2 A:ASP69 4.2 19.1 1.0 N A:GLN11 4.4 14.3 1.0 NZ H:LYS254 4.5 25.0 1.0 O2B A:GTP501 4.6 12.7 1.0 O1A A:GTP501 4.6 12.9 1.0 CG A:ASP69 4.7 19.0 1.0 CB A:ASP98 4.7 27.5 1.0 O3G A:GTP501 4.8 12.9 1.0 PA A:GTP501 4.8 13.0 1.0 OD2 A:ASP98 4.9 28.3 1.0 CA A:GLN11 4.9 14.4 1.0

Magnesium binding site 2 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg502 b:11.0 occ:1.00 O2B B:G2P501 2.2 12.5 1.0 O2G B:G2P501 2.6 12.5 1.0 PG B:G2P501 3.6 12.4 1.0 OE2 B:GLU71 3.6 26.2 1.0 PB B:G2P501 3.7 12.5 1.0 O1G B:G2P501 3.7 12.6 1.0 O3B B:G2P501 3.9 12.4 1.0 CB B:GLN11 4.0 14.2 1.0 OE1 B:GLN11 4.2 15.4 1.0 O2A B:G2P501 4.2 12.8 1.0 CD B:GLU71 4.3 26.2 1.0 OD1 B:ASP69 4.3 17.8 1.0 N B:GLN11 4.4 13.5 1.0 C3A B:G2P501 4.5 12.7 1.0 OD2 B:ASP69 4.6 17.9 1.0 CG B:GLU71 4.7 25.7 1.0 CA B:GLN11 4.7 13.8 1.0 CG2 B:THR74 4.8 27.9 1.0 O1B B:G2P501 4.8 12.5 1.0 CB B:GLU71 4.9 24.8 1.0 PA B:G2P501 4.9 12.7 1.0 CG B:GLN11 4.9 14.7 1.0 CG B:ASP69 4.9 17.7 1.0

Magnesium binding site 3 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:14.2 occ:1.00 O1B C:GTP501 2.1 14.5 1.0 O1G C:GTP501 2.3 14.7 1.0 PB C:GTP501 3.3 14.4 1.0 PG C:GTP501 3.4 14.6 1.0 O3B C:GTP501 3.8 14.5 1.0 O2G C:GTP501 3.8 14.7 1.0 O3A C:GTP501 3.9 14.6 1.0 OE1 C:GLU71 4.0 29.5 1.0 OD1 C:ASP69 4.2 22.6 1.0 OE1 C:GLN11 4.2 17.6 1.0 CB C:GLN11 4.2 17.1 1.0 OD2 C:ASP69 4.2 22.5 1.0 N C:GLN11 4.4 16.8 1.0 NZ I:LYS254 4.6 27.6 1.0 O2B C:GTP501 4.6 14.4 1.0 O1A C:GTP501 4.6 14.6 1.0 CG C:ASP69 4.7 22.4 1.0 CB C:ASP98 4.7 31.4 1.0 O3G C:GTP501 4.7 14.6 1.0 OD2 C:ASP98 4.8 32.6 1.0 PA C:GTP501 4.9 14.7 1.0 CA C:GLN11 4.9 16.9 1.0 CD C:GLU71 5.0 29.5 1.0

Magnesium binding site 4 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg502 b:13.9 occ:1.00 O2B D:G2P501 2.1 14.7 1.0 O2G D:G2P501 2.5 14.8 1.0 PG D:G2P501 3.5 14.7 1.0 PB D:G2P501 3.6 14.7 1.0 OE2 D:GLU71 3.6 29.9 1.0 O1G D:G2P501 3.7 14.9 1.0 O3B D:G2P501 3.8 14.7 1.0 CB D:GLN11 4.0 16.9 1.0 O2A D:G2P501 4.2 14.8 1.0 OE1 D:GLN11 4.3 18.4 1.0 OD1 D:ASP69 4.3 20.4 1.0 CD D:GLU71 4.3 29.8 1.0 N D:GLN11 4.4 16.1 1.0 C3A D:G2P501 4.5 14.8 1.0 OD2 D:ASP69 4.6 20.5 1.0 CG D:GLU71 4.7 29.2 1.0 O1B D:G2P501 4.7 14.7 1.0 CA D:GLN11 4.7 16.4 1.0 CG2 D:THR74 4.8 32.5 1.0 O3G D:G2P501 4.9 14.8 1.0 CG D:ASP69 4.9 20.4 1.0 PA D:G2P501 4.9 14.8 1.0 CB D:GLU71 4.9 28.2 1.0 CG D:GLN11 4.9 17.5 1.0

Magnesium binding site 5 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:15.5 occ:1.00 O1B E:GTP501 2.0 16.0 1.0 O1G E:GTP501 2.2 16.3 1.0 PB E:GTP501 3.2 16.0 1.0 PG E:GTP501 3.3 16.2 1.0 O3B E:GTP501 3.7 16.1 1.0 O2G E:GTP501 3.7 16.4 1.0 O3A E:GTP501 3.8 16.1 1.0 OE1 E:GLU71 4.0 29.2 1.0 CB E:GLN11 4.2 16.4 1.0 OD1 E:ASP69 4.2 21.0 1.0 OE1 E:GLN11 4.2 16.6 1.0 OD2 E:ASP69 4.3 20.9 1.0 N E:GLN11 4.4 16.0 1.0 NZ G:LYS254 4.5 28.4 1.0 O2B E:GTP501 4.5 16.0 1.0 O1A E:GTP501 4.5 16.1 1.0 O3G E:GTP501 4.7 16.3 1.0 CB E:ASP98 4.7 31.6 1.0 CG E:ASP69 4.7 20.8 1.0 PA E:GTP501 4.8 16.2 1.0 OD2 E:ASP98 4.8 32.5 1.0 CA E:GLN11 5.0 16.2 1.0 OG1 E:THR145 5.0 20.9 1.0

Magnesium binding site 6 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg502 b:14.0 occ:1.00 O2B F:G2P501 2.1 15.6 1.0 O2G F:G2P501 2.7 15.6 1.0 OE2 F:GLU71 3.6 29.3 1.0 PB F:G2P501 3.6 15.6 1.0 PG F:G2P501 3.6 15.5 1.0 O1G F:G2P501 3.8 15.8 1.0 O3B F:G2P501 3.9 15.5 1.0 CB F:GLN11 4.0 16.4 1.0 OE1 F:GLN11 4.2 17.7 1.0 O2A F:G2P501 4.2 16.0 1.0 CD F:GLU71 4.3 29.3 1.0 OD1 F:ASP69 4.4 19.4 1.0 N F:GLN11 4.5 15.5 1.0 C3A F:G2P501 4.5 15.9 1.0 CG F:GLU71 4.7 28.6 1.0 OD2 F:ASP69 4.7 19.5 1.0 O1B F:G2P501 4.8 15.7 1.0 CA F:GLN11 4.8 16.0 1.0 CG2 F:THR74 4.8 31.3 1.0 PA F:G2P501 4.9 16.0 1.0 CG F:GLN11 4.9 16.9 1.0 CB F:GLU71 5.0 27.6 1.0 CD F:GLN11 5.0 17.4 1.0

Magnesium binding site 7 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg502 b:10.6 occ:1.00 O1B J:GTP501 2.0 11.1 1.0 O1G J:GTP501 2.2 11.1 1.0 PB J:GTP501 3.2 11.0 1.0 PG J:GTP501 3.3 11.1 1.0 O3B J:GTP501 3.7 11.1 1.0 O2G J:GTP501 3.7 11.2 1.0 O3A J:GTP501 3.8 11.2 1.0 OE1 J:GLU71 4.0 27.8 1.0 OE1 J:GLN11 4.1 13.5 1.0 CB J:GLN11 4.2 13.4 1.0 OD1 J:ASP69 4.4 18.5 1.0 NZ F:LYS254 4.4 23.5 1.0 OD2 J:ASP69 4.4 18.5 1.0 O1A J:GTP501 4.5 11.3 1.0 O2B J:GTP501 4.5 11.1 1.0 N J:GLN11 4.5 13.2 1.0 O3G J:GTP501 4.6 11.2 1.0 PA J:GTP501 4.7 11.3 1.0 CB J:ASP98 4.8 24.0 1.0 OD2 J:ASP98 4.8 24.7 1.0 CG J:ASP69 4.8 18.4 1.0 CA J:GLN11 5.0 13.4 1.0

Magnesium binding site 8 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg502 b:17.3 occ:1.00 O2B H:G2P501 2.2 22.1 1.0 O2G H:G2P501 2.7 22.3 1.0 OE2 H:GLU71 3.5 44.6 1.0 PG H:G2P501 3.7 22.2 1.0 PB H:G2P501 3.7 22.2 1.0 O1G H:G2P501 3.9 22.4 1.0 CB H:GLN11 4.0 23.7 1.0 O3B H:G2P501 4.0 22.1 1.0 O2A H:G2P501 4.2 22.3 1.0 OE1 H:GLN11 4.2 25.4 1.0 CD H:GLU71 4.2 44.2 1.0 OD1 H:ASP69 4.4 31.1 1.0 N H:GLN11 4.5 22.5 1.0 CG H:GLU71 4.6 42.7 1.0 C3A H:G2P501 4.6 22.3 1.0 OD2 H:ASP69 4.7 30.8 1.0 CG2 H:THR74 4.7 42.7 1.0 CA H:GLN11 4.8 23.1 1.0 O1B H:G2P501 4.8 22.2 1.0 CB H:GLU71 4.9 41.2 1.0 CG H:GLN11 4.9 24.3 1.0 PA H:G2P501 5.0 22.3 1.0 CG H:ASP69 5.0 30.8 1.0 CD H:GLN11 5.0 25.0 1.0

Magnesium binding site 9 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg502 b:9.3 occ:1.00 O1B L:GTP501 2.1 9.8 1.0 O1G L:GTP501 2.3 9.8 1.0 PB L:GTP501 3.3 9.8 1.0 PG L:GTP501 3.4 9.8 1.0 O3B L:GTP501 3.8 9.8 1.0 O2G L:GTP501 3.8 9.8 1.0 O3A L:GTP501 3.9 10.0 1.0 OE1 L:GLU71 4.0 27.5 1.0 OE1 L:GLN11 4.1 14.1 1.0 CB L:GLN11 4.2 13.9 1.0 OD1 L:ASP69 4.2 19.5 1.0 OD2 L:ASP69 4.3 19.5 1.0 N L:GLN11 4.4 13.8 1.0 NZ D:LYS254 4.5 22.8 1.0 O2B L:GTP501 4.5 9.8 1.0 O1A L:GTP501 4.6 10.0 1.0 CG L:ASP69 4.7 19.4 1.0 O3G L:GTP501 4.7 9.8 1.0 CB L:ASP98 4.7 24.1 1.0 PA L:GTP501 4.8 10.1 1.0 OD2 L:ASP98 4.9 24.9 1.0 CA L:GLN11 4.9 13.8 1.0 CD L:GLU71 5.0 27.3 1.0

Magnesium binding site 10 out of 12 in the TPX2_MINI Decorated Gmpcpp-Microtubule


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of TPX2_MINI Decorated Gmpcpp-Microtubule within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:21.8 occ:1.00 O2B G:G2P501 2.2 28.6 1.0 O2G G:G2P501 2.7 28.9 1.0 OE2 G:GLU71 3.5 47.6 1.0 PB G:G2P501 3.7 28.8 1.0 PG G:G2P501 3.7 28.7 1.0 O1G G:G2P501 3.9 29.1 1.0 CB G:GLN11 4.0 27.4 1.0 O3B G:G2P501 4.0 28.5 1.0 O2A G:G2P501 4.1 28.9 1.0 OE1 G:GLN11 4.2 29.5 1.0 CD G:GLU71 4.2 47.1 1.0 OD1 G:ASP69 4.4 32.5 1.0 N G:GLN11 4.5 25.8 1.0 C3A G:G2P501 4.6 28.9 1.0 CG G:GLU71 4.6 45.4 1.0 OD2 G:ASP69 4.7 32.2 1.0 CG2 G:THR74 4.8 46.0 1.0 CA G:GLN11 4.8 26.7 1.0 O1B G:G2P501 4.8 28.8 1.0 CB G:GLU71 4.9 43.7 1.0 CG G:GLN11 4.9 28.1 1.0 PA G:G2P501 5.0 29.0 1.0 CD G:GLN11 5.0 29.0 1.0

R.Zhang, J.Roostalu, T.Surrey, E.Nogales. Structural Insight Into TPX2-Stimulated Microtubule Assembly. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 29120325
DOI: 10.7554/ELIFE.30959