Magnesium in PDB 6bjs: Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin

Enzymatic activity of Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin

All present enzymatic activity of Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin:
2.7.7.6;

Other elements in 6bjs:

The structure of Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin (pdb code 6bjs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin, PDB code: 6bjs:

Magnesium binding site 1 out of 1 in 6bjs

Go back to Magnesium Binding Sites List in 6bjs
Magnesium binding site 1 out of 1 in the Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of E.Coli His Pause Elongation Complex Without Pause Hairpin within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg1501

b:0.2
occ:1.00
OD2 J:ASP462 2.1 0.1 1.0
OD2 J:ASP464 2.1 0.8 1.0
OD1 J:ASP460 2.1 0.9 1.0
C5' R:U29 2.5 1.0 1.0
OD1 J:ASP462 2.5 0.1 1.0
CG J:ASP464 2.5 0.8 1.0
OD1 J:ASP464 2.5 0.8 1.0
CG J:ASP462 2.5 0.1 1.0
CG J:ASP460 2.9 0.9 1.0
OD2 J:ASP460 3.1 0.9 1.0
C4' R:U29 3.2 1.0 1.0
O5' R:U29 3.7 1.0 1.0
CB J:ASP464 3.9 0.8 1.0
OP1 R:U29 4.0 1.0 1.0
O2' R:C28 4.0 0.3 1.0
CB J:ASP462 4.0 0.1 1.0
O4' R:U29 4.0 1.0 1.0
O3' R:C28 4.1 0.3 1.0
P R:U29 4.2 1.0 1.0
O J:ASP460 4.3 0.9 1.0
CB J:ASP460 4.3 0.9 1.0
C3' R:U29 4.5 1.0 1.0
N J:ASP460 4.5 0.9 1.0
N J:ASP464 4.5 0.8 1.0
O3' R:U29 4.7 1.0 1.0
CA J:ASP464 4.7 0.8 1.0
C J:ASP460 4.7 0.9 1.0
CA J:ASP460 4.7 0.9 1.0
N J:ASP462 4.8 0.1 1.0
CA J:ASP462 4.9 0.1 1.0
C2' R:C28 5.0 0.3 1.0

Reference:

J.Y.Kang, T.V.Mishanina, M.J.Bellecourt, R.A.Mooney, S.A.Darst, R.Landick. Rna Polymerase Accommodates A Pause Rna Hairpin By Global Conformational Rearrangements That Prolong Pausing. Mol. Cell V. 69 802 2018.
ISSN: ISSN 1097-4164
PubMed: 29499135
DOI: 10.1016/J.MOLCEL.2018.01.018
Page generated: Mon Dec 14 22:23:53 2020

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