Magnesium in PDB 6bnp: Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State

The binding sites of Magnesium atom in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State (pdb code 6bnp). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State, PDB code: 6bnp:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:0.0 occ:1.00 OE1 A:GLN137 1.8 0.0 1.0 O1B A:ADP402 2.4 0.0 1.0 CD A:GLN137 2.8 0.0 1.0 NE2 A:GLN137 3.3 0.0 1.0 PB A:ADP402 3.7 0.0 1.0 OD2 A:ASP154 4.0 0.0 1.0 O3B A:ADP402 4.1 0.0 1.0 CG A:GLN137 4.1 0.0 1.0 O A:ASP157 4.2 0.0 1.0 CB A:GLN137 4.4 0.0 1.0 CA A:GLY156 4.7 0.0 1.0 O3A A:ADP402 4.7 0.0 1.0 O A:VAL159 4.7 0.0 1.0 O2B A:ADP402 4.8 0.0 1.0 C A:GLY156 4.9 0.0 1.0 O A:GLY156 4.9 0.0 1.0 N A:GLY156 4.9 0.0 1.0

Magnesium binding site 2 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:0.0 occ:1.00 OE1 B:GLN137 1.8 0.0 1.0 OD1 B:ASP154 1.9 0.0 1.0 OD2 B:ASP154 2.0 0.0 1.0 CG B:ASP154 2.4 0.0 1.0 O1B B:ADP402 2.4 0.0 1.0 CD B:GLN137 2.9 0.0 1.0 OG B:SER14 3.4 0.0 1.0 NE2 B:GLN137 3.5 0.0 1.0 PB B:ADP402 3.7 0.0 1.0 CB B:ASP154 3.9 0.0 1.0 CG B:GLN137 4.0 0.0 1.0 CB B:GLN137 4.1 0.0 1.0 O3B B:ADP402 4.1 0.0 1.0 N B:GLY156 4.6 0.0 1.0 O3A B:ADP402 4.7 0.0 1.0 O2B B:ADP402 4.8 0.0 1.0 C B:ASP154 4.8 0.0 1.0 O B:VAL159 4.8 0.0 1.0 CA B:GLY156 4.8 0.0 1.0 CB B:SER14 4.8 0.0 1.0 O B:ASP154 4.9 0.0 1.0 CA B:ASP154 4.9 0.0 1.0

Magnesium binding site 3 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg401 b:0.0 occ:1.00 OE1 C:GLN137 1.8 0.0 1.0 OD1 C:ASP154 1.9 0.0 1.0 OD2 C:ASP154 1.9 0.0 1.0 CG C:ASP154 2.3 0.0 1.0 O1B C:ADP402 2.4 0.0 1.0 CD C:GLN137 2.9 0.0 1.0 NE2 C:GLN137 3.6 0.0 1.0 PB C:ADP402 3.7 0.0 1.0 CB C:ASP154 3.9 0.0 1.0 CG C:GLN137 4.1 0.0 1.0 O3B C:ADP402 4.1 0.0 1.0 CB C:GLN137 4.2 0.0 1.0 OG C:SER14 4.3 0.0 1.0 O3A C:ADP402 4.7 0.0 1.0 C C:ASP154 4.8 0.0 1.0 O2B C:ADP402 4.8 0.0 1.0 O C:VAL159 4.8 0.0 1.0 CB C:SER14 4.8 0.0 1.0 N C:GLY156 4.8 0.0 1.0 O C:ASP154 4.9 0.0 1.0 CA C:ASP154 4.9 0.0 1.0 N C:SER14 4.9 0.0 1.0

Magnesium binding site 4 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg401 b:0.0 occ:1.00 OE1 D:GLN137 1.8 0.0 1.0 O1B D:ADP402 2.4 0.0 1.0 CD D:GLN137 2.9 0.0 1.0 NE2 D:GLN137 3.4 0.0 1.0 PB D:ADP402 3.7 0.0 1.0 O3B D:ADP402 4.1 0.0 1.0 CG D:GLN137 4.2 0.0 1.0 OD2 D:ASP154 4.3 0.0 1.0 CB D:GLN137 4.4 0.0 1.0 O D:VAL159 4.4 0.0 1.0 NE2 D:HIS161 4.5 0.0 1.0 O3A D:ADP402 4.7 0.0 1.0 O2B D:ADP402 4.8 0.0 1.0 O D:ASP157 4.9 0.0 1.0 CA D:GLY156 4.9 0.0 1.0

Magnesium binding site 5 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg401 b:0.0 occ:1.00 OE1 E:GLN137 1.8 0.0 1.0 OD2 E:ASP154 1.9 0.0 1.0 OD1 E:ASP154 1.9 0.0 1.0 CG E:ASP154 2.3 0.0 1.0 O1B E:ADP402 2.4 0.0 1.0 CD E:GLN137 2.9 0.0 1.0 OG E:SER14 3.0 0.0 1.0 NE2 E:GLN137 3.4 0.0 1.0 PB E:ADP402 3.7 0.0 1.0 CB E:ASP154 3.9 0.0 1.0 CG E:GLN137 4.1 0.0 1.0 O3B E:ADP402 4.1 0.0 1.0 CB E:GLN137 4.2 0.0 1.0 CB E:SER14 4.3 0.0 1.0 N E:SER14 4.6 0.0 1.0 O3A E:ADP402 4.7 0.0 1.0 N E:GLY156 4.7 0.0 1.0 O2B E:ADP402 4.8 0.0 1.0 C E:ASP154 4.9 0.0 1.0 CA E:GLY156 4.9 0.0 1.0 O E:VAL159 4.9 0.0 1.0 CA E:ASP154 5.0 0.0 1.0 O E:ASP154 5.0 0.0 1.0

Magnesium binding site 6 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg401 b:0.0 occ:1.00 OE1 F:GLN137 1.8 0.0 1.0 OD1 F:ASP154 1.9 0.0 1.0 OD2 F:ASP154 1.9 0.0 1.0 CG F:ASP154 2.3 0.0 1.0 O1B F:ADP402 2.4 0.0 1.0 CD F:GLN137 2.9 0.0 1.0 NE2 F:GLN137 3.6 0.0 1.0 PB F:ADP402 3.7 0.0 1.0 CB F:ASP154 3.9 0.0 1.0 CG F:GLN137 4.1 0.0 1.0 OG F:SER14 4.1 0.0 1.0 O3B F:ADP402 4.1 0.0 1.0 CB F:GLN137 4.2 0.0 1.0 O F:VAL159 4.6 0.0 1.0 O3A F:ADP402 4.7 0.0 1.0 CB F:SER14 4.7 0.0 1.0 N F:GLY156 4.8 0.0 1.0 O2B F:ADP402 4.8 0.0 1.0 C F:ASP154 4.8 0.0 1.0 O F:ASP154 4.9 0.0 1.0 N F:SER14 4.9 0.0 1.0 CA F:ASP154 4.9 0.0 1.0 CA F:GLY156 5.0 0.0 1.0

Magnesium binding site 7 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg401 b:0.0 occ:1.00 OE1 G:GLN137 1.8 0.0 1.0 OD1 G:ASP154 1.8 0.0 1.0 O1B G:ADP402 2.4 0.0 1.0 CG G:ASP154 2.8 0.0 1.0 CD G:GLN137 2.9 0.0 1.0 OD2 G:ASP154 3.1 0.0 1.0 OG G:SER14 3.1 0.0 1.0 NE2 G:GLN137 3.5 0.0 1.0 PB G:ADP402 3.7 0.0 1.0 CG G:GLN137 4.1 0.0 1.0 O3B G:ADP402 4.1 0.0 1.0 CB G:GLN137 4.2 0.0 1.0 CB G:ASP154 4.3 0.0 1.0 CB G:SER14 4.5 0.0 1.0 O3A G:ADP402 4.7 0.0 1.0 O G:VAL159 4.7 0.0 1.0 O2B G:ADP402 4.8 0.0 1.0 N G:GLY156 4.8 0.0 1.0 N G:SER14 4.9 0.0 1.0 C G:ASP154 4.9 0.0 1.0 O G:ASP154 5.0 0.0 1.0

Magnesium binding site 8 out of 8 in the Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryoem Structure of Myosinvi-Actin Complex in the Rigor (Nucleotide- Free) State within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg401 b:0.0 occ:1.00 OE1 H:GLN137 1.8 0.0 1.0 OD2 H:ASP154 1.9 0.0 1.0 OD1 H:ASP154 1.9 0.0 1.0 CG H:ASP154 2.3 0.0 1.0 O1B H:ADP402 2.4 0.0 1.0 CD H:GLN137 2.8 0.0 1.0 NE2 H:GLN137 3.4 0.0 1.0 PB H:ADP402 3.7 0.0 1.0 CB H:ASP154 3.8 0.0 1.0 CG H:GLN137 4.0 0.0 1.0 O3B H:ADP402 4.1 0.0 1.0 CB H:GLN137 4.2 0.0 1.0 O3A H:ADP402 4.7 0.0 1.0 CB H:SER14 4.7 0.0 1.0 O2B H:ADP402 4.8 0.0 1.0 C H:ASP154 4.8 0.0 1.0 N H:GLY156 4.8 0.0 1.0 O H:VAL159 4.8 0.0 1.0 CA H:ASP154 4.9 0.0 1.0 O H:ASP154 4.9 0.0 1.0 N H:SER14 4.9 0.0 1.0

P.S.Gurel, L.Y.Kim, P.V.Ruijgrok, T.Omabegho, Z.Bryant, G.M.Alushin. Cryo-Em Structures Reveal Specialization at the Myosin VI-Actin Interface and A Mechanism of Force Sensitivity. Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 29199952
DOI: 10.7554/ELIFE.31125