Magnesium in PDB 6bqz: Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine

All present enzymatic activity of Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine:
6.1.1.1;

The structure of Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine, PDB code: 6bqz was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.62 / 2.30
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	48.260, 49.800, 73.370, 87.65, 107.11, 113.86
R / Rfree (%)	18 / 23.1

The binding sites of Magnesium atom in the Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine (pdb code 6bqz). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine, PDB code: 6bqz:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:52.8 occ:1.00 OE1 A:GLU133 2.3 44.3 1.0 N A:PHE130 2.9 35.8 1.0 O A:HOH661 3.1 60.0 1.0 CD A:GLU133 3.4 51.6 1.0 CB A:GLU133 3.4 46.4 1.0 CA A:ARG129 3.5 40.5 1.0 O A:PHE130 3.5 37.5 1.0 C A:ARG129 3.7 37.0 1.0 CB A:ARG129 3.7 37.6 1.0 CA A:PHE130 3.9 31.8 1.0 CD1 A:PHE130 3.9 36.4 1.0 CG A:GLU133 3.9 51.6 1.0 CB A:PHE130 4.0 32.3 1.0 CG A:ARG129 4.1 39.2 1.0 C A:PHE130 4.1 34.4 1.0 CG A:PHE130 4.5 33.8 1.0 OE2 A:GLU133 4.5 50.2 1.0 O A:VAL128 4.5 41.0 1.0 NE A:ARG129 4.6 43.8 1.0 CA A:GLU133 4.8 42.6 1.0 N A:ARG129 4.8 36.7 1.0 O A:ARG129 4.9 41.4 1.0 CE1 A:PHE130 4.9 43.0 1.0 CD A:ARG129 4.9 43.5 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg503 b:47.7 occ:1.00 OE1 B:GLU133 2.1 62.6 1.0 O B:HOH654 2.8 53.0 1.0 O B:HOH618 2.9 41.2 1.0 N B:PHE130 3.1 34.2 1.0 CD B:GLU133 3.3 63.0 1.0 CB B:GLU133 3.4 43.0 1.0 CA B:ARG129 3.7 35.9 1.0 O B:PHE130 3.7 33.2 1.0 CG B:GLU133 3.8 55.5 1.0 C B:ARG129 3.9 35.5 1.0 CB B:ARG129 4.0 29.7 1.0 CD1 B:PHE130 4.0 32.7 1.0 CA B:PHE130 4.0 27.4 1.0 CB B:PHE130 4.1 26.0 1.0 CG B:ARG129 4.2 36.8 1.0 C B:PHE130 4.3 28.7 1.0 OE2 B:GLU133 4.3 62.0 1.0 O B:VAL128 4.5 37.6 1.0 CG B:PHE130 4.6 29.2 1.0 NE B:ARG129 4.6 47.2 1.0 CA B:GLU133 4.7 40.6 1.0 N B:ARG129 4.9 31.9 1.0

D.M.Dranow, P.S.Horanyi, D.D.Lorimer, T.E.Edwards. Crystal Structure of Tyrosine-Trna Synthetase From Acinetobacter Baumannii with Bound L-Tyrosine To Be Published.