Magnesium in PDB 6brk: The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation

Protein crystallography data

The structure of The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation, PDB code: 6brk was solved by O.Buzovetsky, C.Tang, K.M.Knecht, J.M.Antonucci, L.Wu, X.Ji, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.50
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 85.755, 102.796, 145.896, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 28.5

Magnesium Binding Sites:

The binding sites of Magnesium atom in the The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation (pdb code 6brk). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation, PDB code: 6brk:

Magnesium binding site 1 out of 1 in 6brk

Go back to Magnesium Binding Sites List in 6brk
Magnesium binding site 1 out of 1 in the The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg703

b:92.8
occ:1.00
O1B A:DGT702 1.9 98.0 1.0
O3G A:DGT704 1.9 98.5 1.0
O3A A:DGT704 2.3 82.1 1.0
O2A A:DGT704 2.9 80.1 1.0
PA A:DGT704 3.0 78.1 1.0
PG A:DGT704 3.1 1.0 1.0
O3B A:DGT704 3.2 95.0 1.0
PB A:DGT704 3.2 88.4 1.0
O2G A:DGT702 3.3 0.3 1.0
PB A:DGT702 3.3 0.3 1.0
O5' A:DGT704 3.4 73.1 1.0
C5' A:DGT704 3.5 71.9 1.0
O2B A:DGT704 3.6 89.4 1.0
O3B A:DGT702 3.9 0.9 1.0
O3' A:DGT704 3.9 77.7 1.0
PG A:DGT702 4.0 0.4 1.0
C3' A:DGT704 4.0 73.6 1.0
O3G A:DGT702 4.1 0.6 1.0
O1G A:DGT704 4.1 0.0 1.0
O2G A:DGT704 4.1 0.6 1.0
O2B A:DGT702 4.1 98.0 1.0
C4' A:DGT704 4.3 71.1 1.0
O3A A:DGT702 4.3 0.4 1.0
O1A A:DGT704 4.4 77.9 1.0
O1B A:DGT704 4.6 89.4 1.0

Reference:

O.Buzovetsky, C.Tang, K.M.Knecht, J.M.Antonucci, L.Wu, X.Ji, Y.Xiong. The Sam Domain of Mouse SAMHD1 Is Critical For Its Activation and Regulation. Nat Commun V. 9 411 2018.
ISSN: ESSN 2041-1723
PubMed: 29379009
DOI: 10.1038/S41467-017-02783-8
Page generated: Mon Dec 14 22:24:48 2020

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