Magnesium in PDB 6c06: Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin

Enzymatic activity of Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin:
2.7.7.6;

Other elements in 6c06:

The structure of Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin also contains other interesting chemical elements:

Zinc (Zn) 2 atoms
Chlorine (Cl) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin (pdb code 6c06). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin, PDB code: 6c06:

Magnesium binding site 1 out of 1 in 6c06

Go back to Magnesium Binding Sites List in 6c06
Magnesium binding site 1 out of 1 in the Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Tuberculosis Rnap Holo/Rbpa/Fidaxomicin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1403

b:0.4
occ:1.00
 O D:ASP535 1.7 0.9 1.0
OD1 D:ASP535 1.8 0.9 1.0
OD2 D:ASP539 1.8 0.9 1.0
OD1 D:ASP537 1.9 0.6 1.0
CG D:ASP537 2.0 0.6 1.0
OD2 D:ASP537 2.4 0.6 1.0
C D:ASP535 2.7 0.9 1.0
CG D:ASP539 2.7 0.9 1.0
CG D:ASP535 2.9 0.9 1.0
CB D:ASP537 2.9 0.6 1.0
N D:ASP537 3.0 0.6 1.0
N D:ASP535 3.2 0.9 1.0
OD1 D:ASP539 3.3 0.9 1.0
CA D:ASP535 3.3 0.9 1.0
CA D:ASP537 3.5 0.6 1.0
CB D:ASP535 3.7 0.9 1.0
N D:PHE536 3.8 0.8 1.0
OD2 D:ASP535 3.8 0.9 1.0
CB D:ASP539 3.9 0.9 1.0
C D:PHE536 4.0 0.8 1.0
N D:GLY538 4.1 0.5 1.0
C D:ASP537 4.1 0.6 1.0
OD2 C:ASP733 4.2 0.4 1.0
CA D:PHE536 4.2 0.8 1.0
C D:ALA534 4.4 0.4 1.0
O D:GLY538 4.4 0.5 1.0
C D:GLY538 4.5 0.5 1.0
N D:ASP539 4.7 0.9 1.0
NH1 D:ARG500 4.8 0.6 1.0
CA D:ASP539 4.9 0.9 1.0
CA D:ALA534 4.9 0.4 1.0
CA D:GLY538 4.9 0.5 1.0

Reference:

H.Boyaci, J.Chen, M.Lilic, M.Palka, R.A.Mooney, R.Landick, S.A.Darst, E.A.Campbell. Fidaxomicin Jamsmycobacterium Tuberculosisrna Polymerase Motions Needed For Initiation Via Rbpa Contacts. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29480804
DOI: 10.7554/ELIFE.34823
Page generated: Mon Dec 14 22:25:38 2020

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