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Magnesium in PDB 6c25: Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp

Enzymatic activity of Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp

All present enzymatic activity of Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp:
6.3.4.4;

Protein crystallography data

The structure of Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp, PDB code: 6c25 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.44 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.810, 90.260, 60.010, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.4

Other elements in 6c25:

The structure of Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp (pdb code 6c25). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp, PDB code: 6c25:

Magnesium binding site 1 out of 1 in 6c25

Go back to Magnesium Binding Sites List in 6c25
Magnesium binding site 1 out of 1 in the Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg501

b:49.2
occ:1.00
 O1A A:GDP500 2.3 26.2 1.0
O A:HOH757 3.0 54.0 1.0
N A:GLY16 3.3 20.7 1.0
N A:LYS17 3.5 21.8 1.0
PA A:GDP500 3.7 32.2 1.0
CA A:GLY16 3.7 25.1 1.0
O1B A:GDP500 3.8 54.0 1.0
O A:HOH734 3.8 32.6 1.0
CA A:ASP14 3.8 21.1 1.0
N A:GLU15 3.9 17.7 1.0
C A:ASP14 3.9 19.5 1.0
C5' A:GDP500 4.0 29.7 1.0
O A:HOH739 4.0 37.1 1.0
O5' A:GDP500 4.0 28.9 1.0
C A:GLY16 4.1 24.9 1.0
N A:ASP14 4.3 23.2 1.0
O3A A:GDP500 4.4 40.4 1.0
O2B A:GDP500 4.4 52.6 1.0
C A:GLU15 4.4 26.5 1.0
N A:GLY18 4.5 20.9 1.0
PB A:GDP500 4.5 50.5 1.0
O A:ASP14 4.5 21.8 1.0
CA A:LYS17 4.6 20.9 1.0
CB A:LYS17 4.6 27.4 1.0
CA A:GLU15 4.8 20.5 1.0
O2A A:GDP500 4.9 28.1 1.0

Reference:

J.Abendroth, D.G.Conrady, D.D.Lorimer, T.E.Edwards. Crystal Structure of Adenylosuccinate Synthetase From Legionella Pneumophila Philadelphia 1 in Complex with Gdp To Be Published.
Page generated: Mon Sep 30 20:06:49 2024

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