Magnesium in PDB 6c3o: Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form

The structure of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form also contains other interesting chemical elements:

Potassium

(K)

3 atoms

The binding sites of Magnesium atom in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form (pdb code 6c3o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form, PDB code: 6c3o:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg2002 b:0.5 occ:1.00 O1B E:ATP2004 2.0 0.6 1.0 O3B E:ATP2004 2.0 0.6 1.0 PB E:ATP2004 2.4 0.6 1.0 OG E:SER720 2.7 0.8 1.0 OE1 E:GLN774 2.8 0.1 1.0 O3A E:ATP2004 3.0 0.6 1.0 O1A E:ATP2004 3.0 0.6 1.0 O3G E:ATP2004 3.1 0.6 1.0 PG E:ATP2004 3.1 0.6 1.0 CB E:SER720 3.2 0.8 1.0 PA E:ATP2004 3.4 0.6 1.0 OG E:SER1482 3.5 0.7 1.0 O1G E:ATP2004 3.6 0.6 1.0 CD E:GLN774 3.6 0.1 1.0 O2B E:ATP2004 3.8 0.6 1.0 NE2 E:GLN774 3.8 0.1 1.0 CB E:SER1482 3.9 0.7 1.0 N E:SER720 4.0 0.8 1.0 O2A E:ATP2004 4.1 0.6 1.0 CA E:SER720 4.2 0.8 1.0 O2G E:ATP2004 4.3 0.6 1.0 CG E:LYS719 4.5 0.1 1.0 CA E:SER1482 4.6 0.7 1.0 OD2 E:ASP854 4.8 0.5 1.0 O5' E:ATP2004 4.8 0.6 1.0

Magnesium binding site 2 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg2003 b:0.9 occ:1.00 O1B E:ADP2001 1.9 0.6 1.0 O3A E:ADP2001 2.1 0.6 1.0 PB E:ADP2001 2.4 0.6 1.0 CB E:SER1385 2.5 0.4 1.0 PA E:ADP2001 2.7 0.6 1.0 O1A E:ADP2001 2.8 0.6 1.0 O2A E:ADP2001 3.0 0.6 1.0 O2B E:ADP2001 3.1 0.6 1.0 OG E:SER1385 3.5 0.4 1.0 N E:SER1385 3.5 0.4 1.0 CA E:SER1385 3.6 0.4 1.0 O3B E:ADP2001 3.8 0.6 1.0 O5' E:ADP2001 4.2 0.6 1.0 C E:SER1385 4.5 0.4 1.0 N E:SER1386 4.7 0.0 1.0 OD1 E:ASP1505 4.8 0.2 1.0 C E:LYS1384 4.8 0.8 1.0 CG E:LYS1384 4.8 0.8 1.0 C5' E:ADP2001 4.8 0.6 1.0 OD2 E:ASP1505 4.9 0.2 1.0 N E:LYS1384 5.0 0.8 1.0

Magnesium binding site 3 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg2002 b:0.5 occ:1.00 O1B H:ATP2004 2.0 0.6 1.0 O3B H:ATP2004 2.0 0.6 1.0 PB H:ATP2004 2.4 0.6 1.0 OG H:SER720 2.7 0.8 1.0 OE1 H:GLN774 2.8 0.1 1.0 O3A H:ATP2004 3.0 0.6 1.0 O1A H:ATP2004 3.0 0.6 1.0 O3G H:ATP2004 3.1 0.6 1.0 PG H:ATP2004 3.1 0.6 1.0 CB H:SER720 3.2 0.8 1.0 PA H:ATP2004 3.4 0.6 1.0 OG H:SER1482 3.5 0.7 1.0 O1G H:ATP2004 3.6 0.6 1.0 CD H:GLN774 3.6 0.1 1.0 O2B H:ATP2004 3.8 0.6 1.0 NE2 H:GLN774 3.8 0.1 1.0 CB H:SER1482 3.9 0.7 1.0 N H:SER720 4.0 0.8 1.0 O2A H:ATP2004 4.1 0.6 1.0 CA H:SER720 4.2 0.8 1.0 O2G H:ATP2004 4.3 0.6 1.0 CG H:LYS719 4.5 0.1 1.0 CA H:SER1482 4.6 0.7 1.0 OD2 H:ASP854 4.8 0.5 1.0 O5' H:ATP2004 4.8 0.6 1.0 CG H:GLN774 5.0 0.1 1.0

Magnesium binding site 4 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg2003 b:0.9 occ:1.00 O1B H:ADP2001 1.9 0.6 1.0 O3A H:ADP2001 2.1 0.6 1.0 PB H:ADP2001 2.4 0.6 1.0 CB H:SER1385 2.5 0.4 1.0 PA H:ADP2001 2.7 0.6 1.0 O1A H:ADP2001 2.8 0.6 1.0 O2A H:ADP2001 3.0 0.6 1.0 O2B H:ADP2001 3.1 0.6 1.0 OG H:SER1385 3.5 0.4 1.0 N H:SER1385 3.5 0.4 1.0 CA H:SER1385 3.6 0.4 1.0 O3B H:ADP2001 3.8 0.6 1.0 O5' H:ADP2001 4.2 0.6 1.0 C H:SER1385 4.5 0.4 1.0 N H:SER1386 4.7 0.0 1.0 OD1 H:ASP1505 4.8 0.2 1.0 C H:LYS1384 4.8 0.8 1.0 CG H:LYS1384 4.8 0.8 1.0 C5' H:ADP2001 4.8 0.6 1.0 OD2 H:ASP1505 4.9 0.2 1.0 N H:LYS1384 5.0 0.8 1.0

Magnesium binding site 5 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg2002 b:0.5 occ:1.00 O3B G:ATP2004 2.0 0.6 1.0 O1B G:ATP2004 2.0 0.6 1.0 PB G:ATP2004 2.4 0.6 1.0 OG G:SER720 2.7 0.8 1.0 OE1 G:GLN774 2.8 0.1 1.0 O3A G:ATP2004 3.0 0.6 1.0 O1A G:ATP2004 3.0 0.6 1.0 O3G G:ATP2004 3.1 0.6 1.0 PG G:ATP2004 3.1 0.6 1.0 CB G:SER720 3.2 0.8 1.0 PA G:ATP2004 3.4 0.6 1.0 OG G:SER1482 3.5 0.7 1.0 O1G G:ATP2004 3.6 0.6 1.0 CD G:GLN774 3.6 0.1 1.0 O2B G:ATP2004 3.8 0.6 1.0 NE2 G:GLN774 3.8 0.1 1.0 CB G:SER1482 3.9 0.7 1.0 N G:SER720 4.0 0.8 1.0 O2A G:ATP2004 4.1 0.6 1.0 CA G:SER720 4.2 0.8 1.0 O2G G:ATP2004 4.3 0.6 1.0 CG G:LYS719 4.5 0.1 1.0 CA G:SER1482 4.6 0.7 1.0 OD2 G:ASP854 4.8 0.5 1.0 O5' G:ATP2004 4.8 0.6 1.0

Magnesium binding site 6 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg2003 b:0.9 occ:1.00 O1B G:ADP2001 1.9 0.6 1.0 O3A G:ADP2001 2.1 0.6 1.0 PB G:ADP2001 2.4 0.6 1.0 CB G:SER1385 2.5 0.4 1.0 PA G:ADP2001 2.7 0.6 1.0 O1A G:ADP2001 2.8 0.6 1.0 O2A G:ADP2001 3.0 0.6 1.0 O2B G:ADP2001 3.1 0.6 1.0 OG G:SER1385 3.5 0.4 1.0 N G:SER1385 3.5 0.4 1.0 CA G:SER1385 3.6 0.4 1.0 O3B G:ADP2001 3.8 0.6 1.0 O5' G:ADP2001 4.2 0.6 1.0 C G:SER1385 4.5 0.4 1.0 N G:SER1386 4.7 0.0 1.0 OD1 G:ASP1505 4.8 0.2 1.0 C G:LYS1384 4.8 0.8 1.0 CG G:LYS1384 4.8 0.8 1.0 C5' G:ADP2001 4.8 0.6 1.0 OD2 G:ASP1505 4.9 0.2 1.0 N G:LYS1384 5.0 0.8 1.0

Magnesium binding site 7 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg2002 b:0.5 occ:1.00 O1B F:ATP2004 2.0 0.6 1.0 O3B F:ATP2004 2.0 0.6 1.0 PB F:ATP2004 2.4 0.6 1.0 OG F:SER720 2.7 0.8 1.0 OE1 F:GLN774 2.8 0.1 1.0 O3A F:ATP2004 3.0 0.6 1.0 O1A F:ATP2004 3.0 0.6 1.0 O3G F:ATP2004 3.1 0.6 1.0 PG F:ATP2004 3.1 0.6 1.0 CB F:SER720 3.2 0.8 1.0 PA F:ATP2004 3.4 0.6 1.0 OG F:SER1482 3.5 0.7 1.0 O1G F:ATP2004 3.6 0.6 1.0 CD F:GLN774 3.6 0.1 1.0 O2B F:ATP2004 3.8 0.6 1.0 NE2 F:GLN774 3.8 0.1 1.0 CB F:SER1482 3.9 0.7 1.0 N F:SER720 4.0 0.8 1.0 O2A F:ATP2004 4.1 0.6 1.0 CA F:SER720 4.2 0.8 1.0 O2G F:ATP2004 4.3 0.6 1.0 CG F:LYS719 4.5 0.1 1.0 CA F:SER1482 4.6 0.7 1.0 OD2 F:ASP854 4.8 0.5 1.0 O5' F:ATP2004 4.8 0.6 1.0

Magnesium binding site 8 out of 8 in the Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Cryo-Em Structure of Human Katp Bound to Atp and Adp in Quatrefoil Form within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg2003 b:0.9 occ:1.00 O1B F:ADP2001 1.9 0.6 1.0 O3A F:ADP2001 2.1 0.6 1.0 PB F:ADP2001 2.4 0.6 1.0 CB F:SER1385 2.5 0.4 1.0 PA F:ADP2001 2.7 0.6 1.0 O1A F:ADP2001 2.8 0.6 1.0 O2A F:ADP2001 3.0 0.6 1.0 O2B F:ADP2001 3.1 0.6 1.0 OG F:SER1385 3.5 0.4 1.0 N F:SER1385 3.5 0.4 1.0 CA F:SER1385 3.6 0.4 1.0 O3B F:ADP2001 3.8 0.6 1.0 O5' F:ADP2001 4.2 0.6 1.0 C F:SER1385 4.5 0.4 1.0 N F:SER1386 4.7 0.0 1.0 OD1 F:ASP1505 4.8 0.2 1.0 C F:LYS1384 4.8 0.8 1.0 CG F:LYS1384 4.8 0.8 1.0 C5' F:ADP2001 4.8 0.6 1.0 OD2 F:ASP1505 4.9 0.2 1.0 N F:LYS1384 5.0 0.8 1.0

K.P.K.Lee, J.Chen, R.Mackinnon. Molecular Structure of Human Katp in Complex with Atp and Adp Elife V. 6 2017.
ISSN: ESSN 2050-084X
PubMed: 29286281
DOI: 10.7554/ELIFE.32481