Magnesium in PDB 6c8l: Rna-Activated 2-Aipg Monomer Complex, 1H Soaking

The structure of Rna-Activated 2-Aipg Monomer Complex, 1H Soaking, PDB code: 6c8l was solved by W.Zhang, J.W.Szostak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 2.25
Space group	P 3 2 1
Cell size a, b, c (Å), α, β, γ (°)	47.948, 47.948, 82.388, 90.00, 90.00, 120.00
R / Rfree (%)	17 / 25.3

The binding sites of Magnesium atom in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking (pdb code 6c8l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking, PDB code: 6c8l:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Rna-Activated 2-Aipg Monomer Complex, 1H Soaking within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:78.0 occ:0.33 O2D B:EQ1101 2.0 57.3 1.0 O3D B:EQ1101 3.1 63.2 1.0 C2D B:EQ1101 3.5 59.8 1.0 C3D B:EQ1101 3.9 61.5 1.0 C4D B:EQ1101 4.4 73.5 1.0 C1D B:EQ1101 4.6 61.8 1.0 O4D B:EQ1101 4.8 68.2 1.0

Magnesium binding site 2 out of 4 in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Rna-Activated 2-Aipg Monomer Complex, 1H Soaking within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg103 b:73.1 occ:1.00 O A:HOH204 1.8 82.7 1.0 O A:HOH201 1.8 59.2 1.0 O B:HOH202 1.9 52.4 1.0 OP1 A:LCG4 3.8 49.6 1.0 OP2 A:A5 4.2 52.8 1.0 OP1 B:C6 4.7 47.4 1.0 O5' A:LCG4 5.0 50.6 1.0 OP1 A:A5 5.0 57.6 1.0 P A:A5 5.0 49.2 1.0

Magnesium binding site 3 out of 4 in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Rna-Activated 2-Aipg Monomer Complex, 1H Soaking within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:91.6 occ:0.33 O3D A:EQ1101 2.6 79.7 1.0 O2D A:EQ1101 3.3 62.5 1.0 C3D A:EQ1101 3.8 71.0 1.0 C2D A:EQ1101 4.1 67.1 1.0 C4D A:EQ1101 4.3 70.1 1.0

Magnesium binding site 4 out of 4 in the Rna-Activated 2-Aipg Monomer Complex, 1H Soaking


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Rna-Activated 2-Aipg Monomer Complex, 1H Soaking within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg103 b:61.6 occ:1.00 O B:HOH201 2.1 58.5 1.0 O2' B:A5 4.4 48.6 1.0

W.Zhang, T.Walton, L.Li, J.W.Szostak. Crystallographic Observation of Nonenzymatic Rna Primer Extension. Elife V. 7 2018.
ISSN: ESSN 2050-084X
PubMed: 29851379
DOI: 10.7554/ELIFE.36422