Magnesium in PDB 6c8z: Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales

Enzymatic activity of Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales

All present enzymatic activity of Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales:
2.7.1.146;

Protein crystallography data

The structure of Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales, PDB code: 6c8z was solved by V.Castro-Fernandez, F.Gonzalez-Ordenes, S.Munoz, N.Fuentes, D.Leonardo, M.Fuentealba, A.Herrera-Morande, P.Maturana, P.Villalobos, R.Garratt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.99 / 2.86
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 81.081, 75.986, 82.442, 90.00, 94.92, 90.00
R / Rfree (%) 19.8 / 23.9

Other elements in 6c8z:

The structure of Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales also contains other interesting chemical elements:

Nickel (Ni) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales (pdb code 6c8z). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales, PDB code: 6c8z:

Magnesium binding site 1 out of 1 in 6c8z

Go back to Magnesium Binding Sites List in 6c8z
Magnesium binding site 1 out of 1 in the Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Last Common Ancestor of Adp-Dependent Phosphofructokinases From Methanosarcinales within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:71.8
occ:1.00
 O A:HOH602 2.0 72.1 1.0
O3B A:ADP501 2.0 96.8 1.0
O A:HOH601 2.1 67.7 1.0
O A:HOH604 2.1 72.0 1.0
O A:HOH603 2.1 63.3 1.0
O2A A:ADP501 2.1 76.3 1.0
PB A:ADP501 3.2 96.6 1.0
PA A:ADP501 3.2 80.3 1.0
O3A A:ADP501 3.2 90.0 1.0
O2B A:ADP501 3.9 99.7 1.0
OD1 A:ASP471 3.9 72.6 1.0
OE2 A:GLU313 4.0 75.0 1.0
O5' A:ADP501 4.1 78.2 1.0
OE2 A:GLU282 4.3 55.8 1.0
O1A A:ADP501 4.4 80.7 1.0
O1B A:ADP501 4.4 94.7 1.0
CE1 A:HIS360 4.4 47.3 1.0
O A:PHE283 4.6 55.3 1.0
OE1 A:GLU313 4.6 66.0 1.0
N A:ASP471 4.6 49.5 1.0
CA A:GLY470 4.6 49.8 1.0
NE2 A:HIS360 4.7 47.6 1.0
CD A:GLU313 4.7 74.7 1.0
CG A:ASP471 4.8 70.1 1.0
C A:GLY470 4.8 54.5 1.0
OD2 A:ASP310 4.9 68.3 1.0
OG1 A:THR284 5.0 73.3 1.0

Reference:

F.Gonzalez-Ordenes, P.A.Cea, N.Fuentes-Ugarte, S.M.Munoz, R.A.Zamora, D.Leonardo, R.C.Garratt, V.Castro-Fernandez, V.Guixe. Adp-Dependent Kinases From the Archaeal Ordermethanosarcinalesadapt to Salt By A Non-Canonical Evolutionarily Conserved Strategy. Front Microbiol V. 9 1305 2018.
ISSN: ESSN 1664-302X
PubMed: 29997580
DOI: 10.3389/FMICB.2018.01305
Page generated: Mon Dec 14 22:26:54 2020

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