Magnesium in PDB 6cj0: Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa

Protein crystallography data

The structure of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa, PDB code: 6cj0 was solved by A.Hofmann, M.Cross, S.-Y.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.78 / 1.90
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 74.936, 67.004, 75.572, 90.00, 119.71, 90.00
R / Rfree (%) 17.4 / 21.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa (pdb code 6cj0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa, PDB code: 6cj0:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6cj0

Go back to Magnesium Binding Sites List in 6cj0
Magnesium binding site 1 out of 2 in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:17.9
occ:1.00
OD2 A:ASP11 2.1 31.9 1.0
O A:HOH418 2.1 26.8 1.0
O A:ASP13 2.2 26.1 1.0
O1 A:CO3302 2.3 30.6 1.0
O A:HOH457 2.3 29.3 1.0
OD1 A:ASP220 2.4 25.6 1.0
CG A:ASP11 2.8 86.3 1.0
OD1 A:ASP11 3.0 40.5 1.0
C A:CO3302 3.4 29.6 1.0
CG A:ASP220 3.4 36.6 1.0
C A:ASP13 3.4 25.2 1.0
OD2 A:ASP220 3.7 37.5 1.0
N A:ASP13 4.1 22.2 1.0
O2 A:CO3302 4.1 29.1 1.0
CA A:ASP13 4.1 17.9 1.0
O3 A:CO3302 4.2 30.0 1.0
OD2 A:ASP224 4.2 24.8 1.0
O A:HOH408 4.2 33.5 1.0
CB A:ASP11 4.2 27.3 1.0
OG A:SER221 4.3 31.4 1.0
OG1 A:THR15 4.3 27.1 1.0
CB A:ASP13 4.3 26.2 1.0
OD2 A:ASP14 4.4 34.1 1.0
N A:ASP14 4.5 18.6 1.0
CB A:ASP14 4.5 28.0 1.0
C A:LEU12 4.6 23.9 1.0
CB A:ASP220 4.7 18.6 1.0
N A:THR15 4.7 22.6 1.0
N A:LEU12 4.7 16.6 1.0
CA A:ASP14 4.8 23.8 1.0
C A:ASP14 4.9 20.9 1.0
CG A:ASP14 4.9 70.1 1.0

Magnesium binding site 2 out of 2 in 6cj0

Go back to Magnesium Binding Sites List in 6cj0
Magnesium binding site 2 out of 2 in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:17.1
occ:1.00
OD2 B:ASP11 2.0 31.8 1.0
O B:HOH414 2.2 25.7 1.0
O B:ASP13 2.2 24.9 1.0
O1 B:CO3302 2.3 30.0 1.0
O B:HOH453 2.3 28.0 1.0
OD1 B:ASP220 2.4 27.4 1.0
CG B:ASP11 2.8 86.3 1.0
OD1 B:ASP11 3.0 57.9 1.0
CG B:ASP220 3.4 40.9 1.0
C B:CO3302 3.4 29.3 1.0
C B:ASP13 3.4 26.4 1.0
OD2 B:ASP220 3.7 30.0 1.0
O2 B:CO3302 4.1 28.4 1.0
N B:ASP13 4.1 23.1 1.0
CA B:ASP13 4.1 16.3 1.0
OD2 B:ASP224 4.2 25.8 1.0
O3 B:CO3302 4.2 29.3 1.0
CB B:ASP11 4.2 23.6 1.0
O B:HOH405 4.2 32.2 1.0
OG B:SER221 4.3 30.2 1.0
OG1 B:THR15 4.3 26.4 1.0
CB B:ASP13 4.4 28.2 1.0
OD2 B:ASP14 4.4 32.4 1.0
CB B:ASP14 4.5 24.1 1.0
N B:ASP14 4.5 18.9 1.0
C B:LEU12 4.6 23.8 1.0
CB B:ASP220 4.7 21.7 1.0
N B:LEU12 4.7 16.4 1.0
N B:THR15 4.7 21.4 1.0
CA B:ASP14 4.8 20.5 1.0
C B:ASP14 4.9 21.9 1.0
CG B:ASP14 4.9 74.3 1.0
N B:ASP220 5.0 19.1 1.0

Reference:

M.Cross, S.Biberacher, S.Y.Park, S.Rajan, P.Korhonen, R.B.Gasser, J.S.Kim, M.J.Coster, A.Hofmann. Trehalose 6-Phosphate Phosphatases of Pseudomonas Aeruginosa. Faseb J. V. 32 5470 2018.
ISSN: ESSN 1530-6860
PubMed: 29688811
DOI: 10.1096/FJ.201800500R
Page generated: Mon Dec 14 22:31:02 2020

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