Atomistry » Magnesium » PDB 6cfv-6cpt » 6cn1
Atomistry »
  Magnesium »
    PDB 6cfv-6cpt »
      6cn1 »

Magnesium in PDB 6cn1: 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium

Enzymatic activity of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium

All present enzymatic activity of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium:
2.5.1.7;

Protein crystallography data

The structure of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium, PDB code: 6cn1 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, A.Cardona-Correa, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.95 / 2.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 128.615, 148.119, 164.627, 90.00, 90.00, 90.00
R / Rfree (%) 21 / 25.2

Other elements in 6cn1:

The structure of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium also contains other interesting chemical elements:

Chlorine (Cl) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium (pdb code 6cn1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium, PDB code: 6cn1:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 1 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:48.1
occ:1.00
 O A:HOH602 2.2 45.7 1.0
O A:HOH639 2.2 46.9 1.0
O A:HOH636 2.2 47.3 1.0
O A:HOH607 2.2 45.8 1.0
O1 A:0V5502 2.2 52.2 1.0
O2P A:0V5502 2.2 49.0 1.0
C1 A:0V5502 3.0 51.8 1.0
P A:0V5502 3.5 47.9 1.0
O2' A:0V5502 3.6 51.6 1.0
NH1 A:ARG400 3.9 50.0 1.0
C2 A:0V5502 4.0 50.7 1.0
O3P A:0V5502 4.1 47.8 1.0
O2 A:0V5502 4.1 50.1 1.0
O A:HOH620 4.2 49.3 1.0
O B:HOH640 4.4 30.4 1.0
O A:THR91 4.4 48.0 1.0
C3 A:0V5502 4.4 51.5 1.0
O A:LYS90 4.5 46.8 1.0
O1P A:0V5502 4.6 47.2 1.0
C A:THR91 5.0 47.6 1.0

Magnesium binding site 2 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 2 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg502

b:47.3
occ:1.00
 O B:HOH632 2.2 46.1 1.0
O B:HOH609 2.2 45.5 1.0
O B:HOH615 2.2 45.2 1.0
O1P B:0V5501 2.2 48.3 1.0
O2' B:0V5501 2.2 49.1 1.0
O B:HOH630 2.2 47.2 1.0
C1 B:0V5501 2.8 50.0 1.0
O1 B:0V5501 3.3 51.9 1.0
P B:0V5501 3.4 48.2 1.0
NH1 B:ARG400 3.7 50.4 1.0
O3P B:0V5501 3.8 48.0 1.0
C2 B:0V5501 3.9 48.4 1.0
O2 B:0V5501 3.9 49.6 1.0
O B:THR91 4.1 43.6 1.0
C3 B:0V5501 4.4 48.9 1.0
O B:LYS90 4.4 44.6 1.0
C B:THR91 4.6 44.0 1.0
O2P B:0V5501 4.6 47.5 1.0
CZ B:ARG400 4.8 51.1 1.0
CA B:THR91 4.9 44.3 1.0

Magnesium binding site 3 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 3 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg503

b:41.1
occ:1.00
 O C:HOH643 2.2 40.6 1.0
O C:HOH619 2.2 42.0 1.0
O2P C:0V5502 2.2 39.5 1.0
O C:HOH601 2.2 42.0 1.0
O2' C:0V5502 2.2 45.6 1.0
O C:HOH624 2.2 42.1 1.0
C1 C:0V5502 2.8 46.1 1.0
O1 C:0V5502 3.3 46.3 1.0
P C:0V5502 3.3 40.1 1.0
O1P C:0V5502 3.6 40.8 1.0
NH1 C:ARG400 3.8 46.9 1.0
C2 C:0V5502 3.8 44.5 1.0
O2 C:0V5502 3.9 42.6 1.0
O C:THR91 4.1 41.3 1.0
C3 C:0V5502 4.2 45.1 1.0
O C:LYS90 4.3 40.9 1.0
C C:THR91 4.5 41.4 1.0
O3P C:0V5502 4.6 40.1 1.0
CA C:THR91 4.9 42.1 1.0
CZ C:ARG400 4.9 47.1 1.0

Magnesium binding site 4 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 4 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg502

b:39.2
occ:1.00
 O D:HOH635 2.2 39.0 1.0
O D:HOH601 2.2 38.5 1.0
O2P D:0V5501 2.2 37.6 1.0
O D:HOH627 2.2 37.4 1.0
O1 D:0V5501 2.2 43.3 1.0
O D:HOH631 2.2 38.8 1.0
C1 D:0V5501 3.2 43.9 1.0
P D:0V5501 3.4 37.8 1.0
NH1 D:ARG400 3.6 41.6 1.0
O3P D:0V5501 3.8 37.4 1.0
O D:THR91 3.8 41.8 1.0
O2' D:0V5501 3.8 47.0 1.0
O D:HOH626 3.9 41.0 1.0
O2 D:0V5501 4.0 39.6 1.0
C2 D:0V5501 4.1 40.2 1.0
O D:LYS90 4.3 38.8 1.0
C D:THR91 4.5 40.4 1.0
O1P D:0V5501 4.6 36.3 1.0
C3 D:0V5501 4.6 40.1 1.0
CZ D:ARG400 4.7 40.9 1.0
CA D:THR91 4.9 40.6 1.0

Magnesium binding site 5 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 5 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg502

b:44.8
occ:1.00
 O E:HOH602 2.2 44.5 1.0
O E:HOH608 2.2 45.4 1.0
O E:HOH631 2.2 43.4 1.0
O2' E:0V5501 2.2 47.5 1.0
O E:HOH627 2.2 44.4 1.0
O1P E:0V5501 2.2 46.7 1.0
C1 E:0V5501 2.9 48.4 1.0
O1 E:0V5501 3.4 50.4 1.0
P E:0V5501 3.5 47.0 1.0
NH1 E:ARG400 3.7 43.5 1.0
C2 E:0V5501 3.8 46.7 1.0
O E:THR91 3.9 45.5 1.0
O2 E:0V5501 4.0 47.3 1.0
C3 E:0V5501 4.1 46.5 1.0
O2P E:0V5501 4.1 46.4 1.0
O E:LYS90 4.5 46.7 1.0
C E:THR91 4.6 45.2 1.0
O3P E:0V5501 4.7 47.4 1.0
CZ E:ARG400 4.8 43.7 1.0
CA E:THR91 4.9 45.8 1.0

Magnesium binding site 6 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 6 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg503

b:46.1
occ:1.00
 O1 F:0V5502 2.1 46.6 1.0
O F:HOH602 2.2 45.1 1.0
O F:HOH628 2.2 46.2 1.0
O F:HOH601 2.2 44.6 1.0
O F:HOH622 2.2 44.2 1.0
O2P F:0V5502 2.2 47.0 1.0
C1 F:0V5502 2.9 47.5 1.0
P F:0V5502 3.5 47.5 1.0
NH1 F:ARG400 3.5 50.1 1.0
O2' F:0V5502 3.6 47.1 1.0
C2 F:0V5502 3.8 47.7 1.0
C3 F:0V5502 3.8 48.5 1.0
O3P F:0V5502 3.9 47.9 1.0
O F:THR91 3.9 39.8 1.0
O2 F:0V5502 4.0 48.8 1.0
O F:LYS90 4.3 43.4 1.0
C F:THR91 4.3 40.9 1.0
CZ F:ARG400 4.6 49.7 1.0
O1P F:0V5502 4.7 48.3 1.0
CA F:THR91 4.7 41.7 1.0

Magnesium binding site 7 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 7 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg502

b:52.2
occ:1.00
 O2P G:0V5501 2.2 51.3 1.0
O1 G:0V5501 2.2 55.6 1.0
O G:HOH611 2.2 50.8 1.0
O G:HOH617 2.2 51.8 1.0
O G:HOH601 2.2 51.0 1.0
O G:HOH613 2.2 50.9 1.0
C1 G:0V5501 2.7 56.0 1.0
O2' G:0V5501 3.2 56.4 1.0
P G:0V5501 3.5 52.7 1.0
NH1 G:ARG400 3.7 49.5 1.0
C2 G:0V5501 3.7 53.6 1.0
O2 G:0V5501 3.9 54.8 1.0
O3P G:0V5501 4.0 50.6 1.0
C3 G:0V5501 4.1 53.7 1.0
O G:THR91 4.2 48.6 1.0
O G:LYS90 4.6 49.0 1.0
O1P G:0V5501 4.6 53.5 1.0
C G:THR91 4.7 48.0 1.0
CZ G:ARG400 4.9 50.1 1.0

Magnesium binding site 8 out of 8 in 6cn1

Go back to Magnesium Binding Sites List in 6cn1
Magnesium binding site 8 out of 8 in the 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2- (Phosphonooxy)Propanoic Acid and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg503

b:47.7
occ:1.00
 O H:HOH624 2.2 49.0 1.0
O H:HOH641 2.2 46.8 1.0
O1P H:0V5502 2.2 49.1 1.0
O H:HOH604 2.2 48.4 1.0
O2' H:0V5502 2.2 50.5 1.0
O H:HOH614 2.2 48.4 1.0
C1 H:0V5502 2.7 51.0 1.0
O1 H:0V5502 3.0 53.7 1.0
P H:0V5502 3.4 50.9 1.0
NH1 H:ARG400 3.6 49.3 1.0
C2 H:0V5502 3.7 49.0 1.0
O2 H:0V5502 3.9 49.9 1.0
O2P H:0V5502 3.9 49.4 1.0
C3 H:0V5502 4.1 48.6 1.0
O H:THR91 4.2 49.3 1.0
O H:HOH608 4.2 40.2 1.0
O H:LYS90 4.4 49.1 1.0
O3P H:0V5502 4.6 49.4 1.0
C H:THR91 4.7 48.6 1.0
CZ H:ARG400 4.7 48.4 1.0
CA H:THR91 4.9 49.8 1.0
NH2 H:ARG400 5.0 49.3 1.0

Reference:

G.Minasov, L.Shuvalova, I.Dubrovska, A.Cardona-Correa, S.Grimshaw, K.Kwon, W.F.Anderson, K.J.F.Satchell, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). 2.75 Angstrom Resolution Crystal Structure of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase From Pseudomonas Putida in Complex with Uridine-Diphosphate-2(N-Acetylglucosaminyl) Butyric Acid, (2R)-2-(Phosphonooxy)Propanoic Acid and Magnesium. To Be Published.
Page generated: Mon Sep 30 22:27:58 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy