Magnesium in PDB 6cq3: Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg)

The structure of Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg), PDB code: 6cq3 was solved by J.L.Delgado, N.R.Vance, R.J.Kerns, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.38 / 1.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	24.330, 40.510, 65.030, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 18.9

The structure of Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) also contains other interesting chemical elements:

Cobalt

(Co)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) (pdb code 6cq3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg), PDB code: 6cq3:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:13.5 occ:1.00 O A:HOH268 2.0 13.3 0.9 O A:HOH232 2.0 13.2 0.9 O A:HOH291 2.1 13.3 1.0 O A:HOH227 2.1 10.6 0.8 O A:HOH241 2.1 14.5 1.0 O A:HOH278 2.1 14.8 1.0 H3' A:DA6 3.9 14.5 1.0 OP1 A:DA6 4.1 16.1 1.0 O A:HOH275 4.2 23.2 0.9 O A:HOH229 4.3 12.3 0.8 O A:HOH211 4.4 34.1 1.0 OP2 A:DT7 4.4 12.3 1.0 OP2 A:DA6 4.5 16.5 1.0 P A:DA6 4.6 15.4 1.0 O5' A:DA6 4.7 14.7 1.0 H5'' A:DA6 4.8 16.9 1.0 C3' A:DA6 4.9 12.1 1.0

Magnesium binding site 2 out of 3 in the Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg102 b:15.6 occ:1.00 O A:HOH254 2.0 27.2 0.9 O A:HOH261 2.1 30.2 0.9 O A:HOH274 2.1 28.9 0.7 O A:HOH295 2.2 38.3 1.0 O A:HOH289 2.3 36.0 0.8 O A:HOH294 2.4 34.7 0.9 O A:HOH235 3.6 34.4 0.7 O A:HOH292 3.8 26.9 0.9 OP2 A:DG4 4.5 16.1 1.0 O A:HOH280 4.6 34.2 1.0 O A:HOH204 5.0 21.6 0.8

Magnesium binding site 3 out of 3 in the Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg101 b:19.4 occ:1.00 O B:HOH271 1.9 41.0 0.9 O B:HOH219 1.9 25.2 0.9 O B:HOH272 2.0 35.1 0.7 OP2 B:DG24 3.9 18.9 1.0 O B:HOH247 4.0 32.2 0.8 O B:HOH221 4.7 27.5 0.8

J.L.Delgado, N.R.Vance, R.J.Kerns. Crystal Structure of Dna Dodecamer D(Cgcgaattcgcg) To Be Published.