Magnesium in PDB 6cu1: X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module

The structure of X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module, PDB code: 6cu1 was solved by W.Wang, X.Chen, S.L.Wolin, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.00
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	59.409, 147.108, 101.564, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 23.8

The binding sites of Magnesium atom in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module (pdb code 6cu1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module, PDB code: 6cu1:

Magnesium binding site 1 out of 1 in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg101 b:0.9 occ:1.00 O A:HOH204 2.2 0.1 1.0 O A:HOH206 2.2 0.4 1.0 O A:HOH202 2.2 0.8 1.0 O A:HOH205 2.2 0.0 1.0 O A:HOH208 2.2 0.3 1.0 O A:HOH207 2.2 0.5 1.0 N4 A:C37 3.7 0.8 1.0 C5 A:C37 4.4 0.6 1.0 C4 A:C37 4.5 95.8 1.0 O4 A:U36 4.6 89.9 1.0 N6 A:A38 4.7 67.4 1.0 C4 A:U36 4.9 71.8 1.0 C5 A:U36 5.0 63.3 1.0

W.Wang, X.Chen, S.L.Wolin, Y.Xiong. Structural Basis For Trna Mimicry By A Bacterial Y Rna. Structure V. 26 1635 2018.
ISSN: ISSN 1878-4186
PubMed: 30318468
DOI: 10.1016/J.STR.2018.09.001