Magnesium in PDB 6cu1: X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module

Protein crystallography data

The structure of X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module, PDB code: 6cu1 was solved by W.Wang, X.Chen, S.L.Wolin, Y.Xiong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 59.409, 147.108, 101.564, 90.00, 90.00, 90.00
R / Rfree (%) 22.2 / 23.8

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module (pdb code 6cu1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module, PDB code: 6cu1:

Magnesium binding site 1 out of 1 in 6cu1

Go back to Magnesium Binding Sites List in 6cu1
Magnesium binding site 1 out of 1 in the X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of the S. Typhimurium Yrla Effector-Binding Module within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg101

b:0.9
occ:1.00
O A:HOH204 2.2 0.1 1.0
O A:HOH206 2.2 0.4 1.0
O A:HOH202 2.2 0.8 1.0
O A:HOH205 2.2 0.0 1.0
O A:HOH208 2.2 0.3 1.0
O A:HOH207 2.2 0.5 1.0
N4 A:C37 3.7 0.8 1.0
C5 A:C37 4.4 0.6 1.0
C4 A:C37 4.5 95.8 1.0
O4 A:U36 4.6 89.9 1.0
N6 A:A38 4.7 67.4 1.0
C4 A:U36 4.9 71.8 1.0
C5 A:U36 5.0 63.3 1.0

Reference:

W.Wang, X.Chen, S.L.Wolin, Y.Xiong. Structural Basis For Trna Mimicry By A Bacterial Y Rna. Structure V. 26 1635 2018.
ISSN: ISSN 1878-4186
PubMed: 30318468
DOI: 10.1016/J.STR.2018.09.001
Page generated: Mon Dec 14 22:32:16 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy