Magnesium in PDB 6cy9: SA11 Rotavirus NSP2 with Disulfide Bridge

The structure of SA11 Rotavirus NSP2 with Disulfide Bridge, PDB code: 6cy9 was solved by R.Anish, L.Hu, B.V.V.Prasad, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.24 / 2.62
Space group	I 4 2 2
Cell size a, b, c (Å), α, β, γ (°)	107.224, 107.224, 149.700, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 23.5

The binding sites of Magnesium atom in the SA11 Rotavirus NSP2 with Disulfide Bridge (pdb code 6cy9). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the SA11 Rotavirus NSP2 with Disulfide Bridge, PDB code: 6cy9:

Magnesium binding site 1 out of 1 in the SA11 Rotavirus NSP2 with Disulfide Bridge


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of SA11 Rotavirus NSP2 with Disulfide Bridge within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:39.6 occ:1.00 N A:LYS223 3.3 44.0 1.0 O A:HIS225 3.3 39.1 1.0 CE1 A:HIS225 3.3 52.9 1.0 N A:HIS221 3.4 42.5 1.0 NE A:ARG227 3.5 50.2 1.0 ND1 A:HIS225 3.5 43.5 1.0 NH2 A:ARG227 3.5 60.3 1.0 OG1 A:THR220 3.6 38.8 1.0 NE2 A:HIS225 3.6 44.4 1.0 N A:GLY222 3.7 38.6 1.0 CB A:HIS221 3.8 42.1 1.0 CA A:HIS221 3.8 41.5 1.0 CA A:LYS223 3.8 42.7 1.0 C A:HIS221 3.8 41.3 1.0 CB A:LYS223 3.8 44.9 1.0 N A:HIS225 3.9 39.9 1.0 CZ A:ARG227 3.9 50.1 1.0 CG A:HIS225 4.0 39.8 1.0 CD2 A:HIS225 4.0 40.4 1.0 C A:LYS223 4.0 42.6 1.0 N A:GLY224 4.0 39.3 1.0 C A:HIS225 4.2 38.6 1.0 C A:GLY222 4.3 44.9 1.0 CG A:LYS223 4.4 46.7 1.0 C A:THR220 4.5 39.8 1.0 O A:HOH521 4.5 41.5 1.0 CA A:GLY222 4.5 43.9 1.0 CA A:HIS225 4.5 38.0 1.0 O A:HIS221 4.6 45.5 1.0 CD A:ARG227 4.6 52.3 1.0 CA A:THR220 4.6 37.6 1.0 CB A:THR220 4.7 38.2 1.0 CG A:ARG227 4.7 45.6 1.0 CG A:HIS221 4.7 45.0 1.0 O A:LYS223 4.7 44.3 1.0 CB A:HIS225 4.9 36.7 1.0 C A:GLY224 4.9 40.2 1.0 CD A:LYS223 4.9 51.1 1.0

J.M.Criglar, R.Anish, L.Hu, S.E.Crawford, B.Sankaran, B.V.V.Prasad, M.K.Estes. Phosphorylation Cascade Regulates the Formation and Maturation of Rotaviral Replication Factories. Proc. Natl. Acad. Sci. V. 115 12015 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30509975
DOI: 10.1073/PNAS.1717944115