Magnesium in PDB 6d0y: X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex

The structure of X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex, PDB code: 6d0y was solved by M.L.Gleghorn, L.E.Maquat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.05 / 2.68
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	78.106, 111.897, 124.795, 90.00, 90.00, 90.00
R / Rfree (%)	18.1 / 24

The structure of X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex also contains other interesting chemical elements:

Iodine

(I)

1 atom

The binding sites of Magnesium atom in the X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex (pdb code 6d0y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex, PDB code: 6d0y:

Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Pgc-1BETA C-Terminus Bound to the CBP80- CBP20 Cap Binding Complex within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg901 b:32.1 occ:1.00 HZ1 C:LYS707 2.1 31.7 1.0 OG1 C:THR764 2.5 29.5 1.0 HG22 C:VAL763 2.6 64.0 1.0 H C:THR764 2.6 39.1 1.0 HG1 C:THR764 2.6 35.4 1.0 NZ C:LYS707 2.9 26.4 1.0 HZ2 C:LYS707 2.9 31.7 1.0 HA C:TYR761 2.9 42.3 1.0 HG23 C:VAL763 3.1 64.0 1.0 CG2 C:VAL763 3.2 53.4 1.0 HB C:THR764 3.3 36.6 1.0 HZ3 C:LYS707 3.4 31.7 1.0 N C:THR764 3.4 32.6 1.0 CB C:THR764 3.4 30.5 1.0 HG21 C:VAL763 3.7 64.0 1.0 O C:GLN760 3.7 37.4 1.0 HE3 C:LYS707 3.7 42.8 1.0 H C:VAL763 3.8 48.7 1.0 CA C:TYR761 3.8 35.3 1.0 CE C:LYS707 3.9 35.7 1.0 C C:TYR761 3.9 34.5 1.0 CA C:THR764 4.0 29.0 1.0 O C:TYR761 4.1 33.0 1.0 HE2 C:LYS707 4.2 42.8 1.0 N C:VAL763 4.2 40.6 1.0 HD1 C:TYR761 4.2 39.6 1.0 C C:VAL763 4.4 37.0 1.0 HB3 C:TYR761 4.4 44.3 1.0 HA C:THR764 4.4 34.8 1.0 N C:MET762 4.5 37.1 1.0 CB C:VAL763 4.5 54.7 1.0 O C:HOH1199 4.5 22.2 1.0 CA C:VAL763 4.6 46.9 1.0 C C:GLN760 4.6 31.1 1.0 H C:MET762 4.6 44.6 1.0 N C:TYR761 4.7 31.5 1.0 CB C:TYR761 4.7 36.9 1.0 CG2 C:THR764 4.7 28.2 1.0 HG21 C:THR764 4.8 33.9 1.0 H C:LEU765 4.9 32.0 1.0 HG13 C:VAL763 4.9 64.6 1.0 C C:MET762 5.0 38.8 1.0

H.Cho, X.Rambout, M.L.Gleghorn, P.Q.T.Nguyen, C.R.Phipps, K.Miyoshi, J.R.Myers, N.Kataoka, R.Fasan, L.E.Maquat. Transcriptional Coactivator Pgc-1 Alpha Contains A Novel CBP80-Binding Motif That Orchestrates Efficient Target Gene Expression. Genes Dev. V. 32 555 2018.
ISSN: ISSN 1549-5477
PubMed: 29654059
DOI: 10.1101/GAD.309773.117