Magnesium in PDB 6d2y: Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii

The structure of Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii, PDB code: 6d2y was solved by P.J.Stogios, T.Skarina, Z.Wawrzak, N.Mcgregor, R.Di Leo, H.Brumer, A.Savchenko, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.33 / 2.19
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	82.900, 82.900, 152.470, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 24

The binding sites of Magnesium atom in the Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii (pdb code 6d2y). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii, PDB code: 6d2y:

Magnesium binding site 1 out of 1 in the Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Surface Glycan-Binding Protein Pbsgbp-B From Prevotella Bryantii within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:26.2 occ:1.00 O A:HOH623 2.0 35.1 1.0 O A:SER255 2.3 47.1 1.0 OD1 A:ASP452 2.4 58.1 1.0 O A:ASP225 2.4 49.1 1.0 OD2 A:ASP227 2.4 48.8 1.0 O A:ASN257 2.5 41.2 1.0 OD2 A:ASP452 2.6 49.8 1.0 CG A:ASP452 2.7 56.8 1.0 C A:SER255 3.5 50.2 1.0 C A:ASP225 3.6 47.5 1.0 CG A:ASP227 3.6 48.9 1.0 C A:ASN257 3.6 44.6 1.0 N A:ASN257 3.8 47.5 1.0 O A:HOH621 3.9 58.2 1.0 C A:GLY256 4.0 48.9 1.0 O A:HOH707 4.1 36.7 1.0 CB A:ASP452 4.1 53.1 1.0 CA A:ASP225 4.2 43.4 1.0 OD1 A:ASP227 4.2 49.0 1.0 OD1 A:ASN453 4.3 48.0 1.0 CA A:ASN257 4.3 45.1 1.0 CA A:GLY256 4.3 45.1 1.0 CB A:ASP225 4.4 41.1 1.0 N A:GLY256 4.4 47.1 1.0 O A:GLY256 4.4 45.7 1.0 CA A:SER255 4.5 49.0 1.0 CB A:SER255 4.5 48.9 1.0 CB A:ASP227 4.6 46.8 1.0 N A:PHE226 4.6 40.6 1.0 N A:TYR258 4.7 40.3 1.0 CB A:PHE226 4.7 41.4 1.0 N A:SER255 4.8 51.1 1.0 O A:HOH692 4.8 47.0 1.0 OG A:SER255 4.9 48.9 1.0 C A:PHE226 4.9 36.8 1.0 N A:ASP227 4.9 40.8 1.0 CB A:ASN257 5.0 39.8 1.0 CA A:PHE226 5.0 39.1 1.0 CD2 A:PHE226 5.0 44.0 1.0 CG A:ASP225 5.0 50.5 1.0

N.Mcgregor, P.J.Stogios, T.Skarina, Z.Wawrzak, N.Mcgregor, R.Di Leo, H.Brumer, A.Savchenko. N/A N/A.