Magnesium in PDB 6d36: Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
Enzymatic activity of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
All present enzymatic activity of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium:
3.2.1.143;
Protein crystallography data
The structure of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium, PDB code: 6d36
was solved by
Y.Pourfarjam,
J.Ventura,
I.Kurinov,
I.K.Kim,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.45 /
1.70
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
44.918,
72.330,
115.945,
83.06,
85.74,
72.04
|
|
R / Rfree (%)
|
18.4 /
21.8
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
(pdb code 6d36). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Structure of Human ARH3 Bound to Adp-Ribose and Magnesium, PDB code: 6d36:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 1 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg402
b:18.8
occ:1.00
|
O
|
C:HOH502
|
2.0
|
26.9
|
1.0
|
|
O
|
C:HOH519
|
2.1
|
25.4
|
1.0
|
|
OD1
|
C:ASP314
|
2.2
|
20.5
|
1.0
|
|
OG1
|
C:THR317
|
2.3
|
14.2
|
1.0
|
|
OD1
|
C:ASP316
|
2.3
|
23.2
|
1.0
|
|
O3D
|
C:AR6401
|
2.5
|
21.9
|
1.0
|
|
O1D
|
C:AR6401
|
2.9
|
37.6
|
1.0
|
|
CG
|
C:ASP314
|
3.0
|
20.4
|
1.0
|
|
OD2
|
C:ASP314
|
3.1
|
19.6
|
1.0
|
|
O2D
|
C:AR6401
|
3.1
|
25.9
|
1.0
|
|
CG
|
C:ASP316
|
3.2
|
22.9
|
1.0
|
|
MG
|
C:MG403
|
3.4
|
25.2
|
1.0
|
|
OD2
|
C:ASP316
|
3.5
|
26.0
|
1.0
|
|
CB
|
C:THR317
|
3.5
|
13.3
|
1.0
|
|
C3D
|
C:AR6401
|
3.7
|
23.2
|
1.0
|
|
C2D
|
C:AR6401
|
3.8
|
25.2
|
1.0
|
|
N
|
C:THR317
|
3.9
|
12.8
|
1.0
|
|
C1D
|
C:AR6401
|
3.9
|
31.3
|
1.0
|
|
OE2
|
C:GLU41
|
4.0
|
48.2
|
1.0
|
|
OD1
|
C:ASP78
|
4.0
|
23.9
|
1.0
|
|
OE1
|
C:GLU41
|
4.2
|
47.2
|
1.0
|
|
CA
|
C:THR317
|
4.3
|
12.5
|
1.0
|
|
O
|
C:HOH583
|
4.3
|
27.1
|
1.0
|
|
CD
|
C:GLU41
|
4.3
|
47.7
|
1.0
|
|
C4D
|
C:AR6401
|
4.4
|
25.1
|
1.0
|
|
OD2
|
C:ASP78
|
4.4
|
17.5
|
1.0
|
|
CB
|
C:ASP314
|
4.5
|
17.0
|
1.0
|
|
CG2
|
C:THR317
|
4.5
|
13.1
|
1.0
|
|
O4D
|
C:AR6401
|
4.6
|
30.0
|
1.0
|
|
CB
|
C:ASP316
|
4.6
|
18.0
|
1.0
|
|
CG
|
C:ASP78
|
4.7
|
20.1
|
1.0
|
|
C
|
C:ASP316
|
4.8
|
12.4
|
1.0
|
|
OD1
|
C:ASP77
|
4.9
|
17.0
|
1.0
|
|
CA
|
C:ASP314
|
4.9
|
15.0
|
1.0
|
|
O
|
C:ASP314
|
5.0
|
15.5
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 2 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg403
b:25.2
occ:1.00
|
O
|
C:HOH502
|
2.1
|
26.9
|
1.0
|
|
OD1
|
C:ASP78
|
2.1
|
23.9
|
1.0
|
|
O
|
C:HOH583
|
2.1
|
27.1
|
1.0
|
|
OD1
|
C:ASP77
|
2.2
|
17.0
|
1.0
|
|
OD2
|
C:ASP316
|
2.3
|
26.0
|
1.0
|
|
OG1
|
C:THR76
|
2.4
|
12.5
|
1.0
|
|
CG
|
C:ASP316
|
3.2
|
22.9
|
1.0
|
|
CB
|
C:THR76
|
3.2
|
15.1
|
1.0
|
|
O2D
|
C:AR6401
|
3.3
|
25.9
|
1.0
|
|
CG
|
C:ASP78
|
3.3
|
20.1
|
1.0
|
|
CG
|
C:ASP77
|
3.4
|
15.8
|
1.0
|
|
MG
|
C:MG402
|
3.4
|
18.8
|
1.0
|
|
O
|
C:HOH519
|
3.5
|
25.4
|
1.0
|
|
OD1
|
C:ASP316
|
3.6
|
23.2
|
1.0
|
|
OD2
|
C:ASP77
|
3.9
|
14.0
|
1.0
|
|
N
|
C:ASP78
|
3.9
|
10.9
|
1.0
|
|
CG2
|
C:THR76
|
4.0
|
18.8
|
1.0
|
|
N
|
C:ASP77
|
4.0
|
11.5
|
1.0
|
|
OD2
|
C:ASP78
|
4.0
|
17.5
|
1.0
|
|
OD1
|
C:ASP34
|
4.2
|
15.6
|
1.0
|
|
OG1
|
C:THR317
|
4.2
|
14.2
|
1.0
|
|
CB
|
C:ASP316
|
4.3
|
18.0
|
1.0
|
|
CB
|
C:ASP78
|
4.3
|
13.7
|
1.0
|
|
O3D
|
C:AR6401
|
4.5
|
21.9
|
1.0
|
|
O
|
C:GLY115
|
4.5
|
18.0
|
1.0
|
|
CA
|
C:THR76
|
4.5
|
11.7
|
1.0
|
|
CB
|
C:ASP77
|
4.5
|
15.4
|
1.0
|
|
C
|
C:THR76
|
4.6
|
11.6
|
1.0
|
|
CA
|
C:ASP77
|
4.6
|
14.0
|
1.0
|
|
C2D
|
C:AR6401
|
4.7
|
25.2
|
1.0
|
|
CA
|
C:ASP78
|
4.7
|
11.5
|
1.0
|
|
C
|
C:ASP77
|
4.8
|
12.5
|
1.0
|
|
O
|
C:ARG114
|
4.9
|
23.4
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 3 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:25.9
occ:1.00
|
O
|
D:HOH501
|
2.0
|
27.4
|
1.0
|
|
O
|
D:HOH513
|
2.1
|
29.1
|
1.0
|
|
OD2
|
D:ASP314
|
2.2
|
23.6
|
1.0
|
|
OG1
|
D:THR317
|
2.3
|
16.0
|
1.0
|
|
OD1
|
D:ASP316
|
2.3
|
28.3
|
1.0
|
|
O3D
|
D:AR6401
|
2.5
|
21.1
|
1.0
|
|
CG
|
D:ASP314
|
3.0
|
21.1
|
1.0
|
|
OD1
|
D:ASP314
|
3.0
|
22.9
|
1.0
|
|
O1D
|
D:AR6401
|
3.0
|
30.7
|
1.0
|
|
O2D
|
D:AR6401
|
3.1
|
23.0
|
1.0
|
|
CG
|
D:ASP316
|
3.3
|
25.0
|
1.0
|
|
CB
|
D:THR317
|
3.5
|
14.5
|
1.0
|
|
OD2
|
D:ASP316
|
3.5
|
31.7
|
1.0
|
|
MG
|
D:MG403
|
3.6
|
33.2
|
1.0
|
|
C3D
|
D:AR6401
|
3.7
|
22.0
|
1.0
|
|
C2D
|
D:AR6401
|
3.8
|
20.6
|
1.0
|
|
N
|
D:THR317
|
3.9
|
16.6
|
1.0
|
|
O
|
D:HOH506
|
4.0
|
32.1
|
1.0
|
|
C1D
|
D:AR6401
|
4.0
|
28.1
|
1.0
|
|
OD2
|
D:ASP78
|
4.1
|
25.4
|
1.0
|
|
O
|
D:HOH505
|
4.3
|
31.9
|
1.0
|
|
CA
|
D:THR317
|
4.3
|
14.0
|
1.0
|
|
C4D
|
D:AR6401
|
4.4
|
25.3
|
1.0
|
|
CB
|
D:ASP314
|
4.4
|
16.0
|
1.0
|
|
CG2
|
D:THR317
|
4.5
|
13.0
|
1.0
|
|
OD1
|
D:ASP78
|
4.6
|
24.3
|
1.0
|
|
CE
|
D:MET155
|
4.6
|
24.2
|
1.0
|
|
O
|
D:HOH534
|
4.6
|
62.5
|
1.0
|
|
CB
|
D:ASP316
|
4.7
|
15.7
|
1.0
|
|
O4D
|
D:AR6401
|
4.7
|
28.6
|
1.0
|
|
CG
|
D:ASP78
|
4.8
|
23.1
|
1.0
|
|
C
|
D:ASP316
|
4.8
|
14.2
|
1.0
|
|
O
|
D:ASP314
|
4.9
|
17.9
|
1.0
|
|
CA
|
D:ASP314
|
4.9
|
16.1
|
1.0
|
|
C
|
D:ASP314
|
5.0
|
17.5
|
1.0
|
|
OD1
|
D:ASN151
|
5.0
|
15.5
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 4 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg403
b:33.2
occ:1.00
|
O
|
D:HOH501
|
2.1
|
27.4
|
1.0
|
|
OD2
|
D:ASP316
|
2.2
|
31.7
|
1.0
|
|
O
|
D:HOH534
|
2.2
|
62.5
|
1.0
|
|
OD2
|
D:ASP78
|
2.3
|
25.4
|
1.0
|
|
OD1
|
D:ASP77
|
2.3
|
22.0
|
1.0
|
|
OG1
|
D:THR76
|
2.4
|
14.4
|
1.0
|
|
CB
|
D:THR76
|
3.1
|
15.0
|
1.0
|
|
CG
|
D:ASP316
|
3.1
|
25.0
|
1.0
|
|
O2D
|
D:AR6401
|
3.4
|
23.0
|
1.0
|
|
O
|
D:HOH505
|
3.4
|
31.9
|
1.0
|
|
CG
|
D:ASP77
|
3.5
|
21.6
|
1.0
|
|
CG
|
D:ASP78
|
3.5
|
23.1
|
1.0
|
|
O
|
D:HOH513
|
3.5
|
29.1
|
1.0
|
|
OD1
|
D:ASP316
|
3.6
|
28.3
|
1.0
|
|
MG
|
D:MG402
|
3.6
|
25.9
|
1.0
|
|
CG2
|
D:THR76
|
3.8
|
16.9
|
1.0
|
|
N
|
D:ASP77
|
3.9
|
10.4
|
1.0
|
|
N
|
D:ASP78
|
4.0
|
14.4
|
1.0
|
|
OD2
|
D:ASP77
|
4.0
|
19.5
|
1.0
|
|
OD2
|
D:ASP34
|
4.3
|
14.2
|
1.0
|
|
CB
|
D:ASP316
|
4.3
|
15.7
|
1.0
|
|
OD1
|
D:ASP78
|
4.3
|
24.3
|
1.0
|
|
OG1
|
D:THR317
|
4.4
|
16.0
|
1.0
|
|
CA
|
D:THR76
|
4.4
|
11.8
|
1.0
|
|
CB
|
D:ASP78
|
4.5
|
15.7
|
1.0
|
|
C
|
D:THR76
|
4.5
|
11.6
|
1.0
|
|
O
|
D:GLY115
|
4.5
|
21.0
|
1.0
|
|
CB
|
D:ASP77
|
4.6
|
19.9
|
1.0
|
|
CA
|
D:ASP77
|
4.7
|
15.1
|
1.0
|
|
O3D
|
D:AR6401
|
4.7
|
21.1
|
1.0
|
|
C2D
|
D:AR6401
|
4.8
|
20.6
|
1.0
|
|
C
|
D:ASP77
|
4.8
|
15.2
|
1.0
|
|
CA
|
D:ASP78
|
4.8
|
14.2
|
1.0
|
|
O
|
D:ARG114
|
4.9
|
19.5
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 5 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:27.1
occ:1.00
|
OD2
|
A:ASP78
|
2.1
|
24.4
|
1.0
|
|
O
|
A:HOH501
|
2.1
|
27.3
|
1.0
|
|
OD1
|
A:ASP316
|
2.2
|
28.8
|
1.0
|
|
OD2
|
A:ASP77
|
2.2
|
22.2
|
1.0
|
|
O
|
A:HOH595
|
2.2
|
26.3
|
1.0
|
|
OG1
|
A:THR76
|
2.3
|
16.7
|
1.0
|
|
CB
|
A:THR76
|
3.1
|
15.3
|
1.0
|
|
CG
|
A:ASP316
|
3.3
|
24.6
|
1.0
|
|
O2D
|
A:AR6401
|
3.3
|
31.4
|
1.0
|
|
CG
|
A:ASP78
|
3.3
|
21.2
|
1.0
|
|
CG
|
A:ASP77
|
3.3
|
20.2
|
1.0
|
|
MG
|
A:MG403
|
3.6
|
19.1
|
1.0
|
|
OD2
|
A:ASP316
|
3.8
|
22.9
|
1.0
|
|
OD1
|
A:ASP77
|
3.9
|
19.4
|
1.0
|
|
CG2
|
A:THR76
|
3.9
|
18.3
|
1.0
|
|
N
|
A:ASP77
|
3.9
|
12.7
|
1.0
|
|
N
|
A:ASP78
|
3.9
|
12.8
|
1.0
|
|
O
|
A:HOH532
|
4.0
|
24.4
|
1.0
|
|
OD1
|
A:ASP78
|
4.1
|
20.1
|
1.0
|
|
OD1
|
A:ASP34
|
4.2
|
15.2
|
1.0
|
|
OG1
|
A:THR317
|
4.3
|
18.8
|
1.0
|
|
CB
|
A:ASP78
|
4.4
|
15.4
|
1.0
|
|
CA
|
A:THR76
|
4.4
|
13.7
|
1.0
|
|
CB
|
A:ASP316
|
4.4
|
20.3
|
1.0
|
|
O
|
A:GLY115
|
4.5
|
20.9
|
1.0
|
|
C
|
A:THR76
|
4.5
|
14.1
|
1.0
|
|
CB
|
A:ASP77
|
4.5
|
17.6
|
1.0
|
|
O
|
A:ARG114
|
4.6
|
25.4
|
1.0
|
|
O3D
|
A:AR6401
|
4.6
|
31.4
|
1.0
|
|
CA
|
A:ASP77
|
4.6
|
14.4
|
1.0
|
|
C2D
|
A:AR6401
|
4.7
|
33.9
|
1.0
|
|
C
|
A:ASP77
|
4.7
|
16.4
|
1.0
|
|
CA
|
A:ASP78
|
4.7
|
14.9
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 6 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:19.1
occ:1.00
|
O
|
A:HOH501
|
2.1
|
27.3
|
1.0
|
|
O
|
A:HOH532
|
2.1
|
24.4
|
1.0
|
|
OD2
|
A:ASP316
|
2.2
|
22.9
|
1.0
|
|
OD1
|
A:ASP314
|
2.2
|
26.1
|
1.0
|
|
OG1
|
A:THR317
|
2.2
|
18.8
|
1.0
|
|
O3D
|
A:AR6401
|
2.4
|
31.4
|
1.0
|
|
CG
|
A:ASP314
|
3.0
|
23.1
|
1.0
|
|
CG
|
A:ASP316
|
3.1
|
24.6
|
1.0
|
|
OD2
|
A:ASP314
|
3.1
|
24.5
|
1.0
|
|
O1D
|
A:AR6401
|
3.3
|
43.8
|
1.0
|
|
OD1
|
A:ASP316
|
3.3
|
28.8
|
1.0
|
|
O2D
|
A:AR6401
|
3.4
|
31.4
|
1.0
|
|
CB
|
A:THR317
|
3.4
|
16.9
|
1.0
|
|
MG
|
A:MG402
|
3.6
|
27.1
|
1.0
|
|
C3D
|
A:AR6401
|
3.7
|
32.7
|
1.0
|
|
N
|
A:THR317
|
3.8
|
17.4
|
1.0
|
|
C2D
|
A:AR6401
|
4.0
|
33.9
|
1.0
|
|
OE2
|
A:GLU41
|
4.0
|
54.8
|
1.0
|
|
OD2
|
A:ASP78
|
4.1
|
24.4
|
1.0
|
|
C1D
|
A:AR6401
|
4.2
|
39.2
|
1.0
|
|
CA
|
A:THR317
|
4.2
|
16.6
|
1.0
|
|
O
|
A:HOH595
|
4.4
|
26.3
|
1.0
|
|
OD1
|
A:ASP78
|
4.4
|
20.1
|
1.0
|
|
C4D
|
A:AR6401
|
4.4
|
32.9
|
1.0
|
|
CB
|
A:ASP314
|
4.5
|
19.2
|
1.0
|
|
CG2
|
A:THR317
|
4.5
|
17.0
|
1.0
|
|
CB
|
A:ASP316
|
4.5
|
20.3
|
1.0
|
|
CD
|
A:GLU41
|
4.6
|
55.0
|
1.0
|
|
C
|
A:ASP316
|
4.7
|
18.2
|
1.0
|
|
CG
|
A:ASP78
|
4.7
|
21.2
|
1.0
|
|
O4D
|
A:AR6401
|
4.8
|
37.1
|
1.0
|
|
OE1
|
A:GLU41
|
4.8
|
53.9
|
1.0
|
|
N
|
A:ASP316
|
4.9
|
17.4
|
1.0
|
|
CA
|
A:ASP316
|
4.9
|
17.1
|
1.0
|
|
O
|
A:ASP314
|
4.9
|
18.4
|
1.0
|
|
CA
|
A:ASP314
|
4.9
|
18.4
|
1.0
|
|
C
|
A:ASP314
|
5.0
|
18.3
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 7 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg402
b:33.8
occ:1.00
|
O
|
B:HOH501
|
2.1
|
35.4
|
1.0
|
|
O
|
B:HOH554
|
2.2
|
41.2
|
1.0
|
|
OD1
|
B:ASP314
|
2.2
|
29.3
|
1.0
|
|
OG1
|
B:THR317
|
2.3
|
22.1
|
1.0
|
|
OD1
|
B:ASP316
|
2.3
|
32.8
|
1.0
|
|
O3D
|
B:AR6401
|
2.5
|
35.8
|
1.0
|
|
CG
|
B:ASP314
|
3.1
|
29.4
|
1.0
|
|
O1D
|
B:AR6401
|
3.1
|
40.6
|
1.0
|
|
CG
|
B:ASP316
|
3.2
|
30.7
|
1.0
|
|
O2D
|
B:AR6401
|
3.3
|
36.1
|
1.0
|
|
OD2
|
B:ASP314
|
3.3
|
28.4
|
1.0
|
|
OD2
|
B:ASP316
|
3.4
|
34.6
|
1.0
|
|
CB
|
B:THR317
|
3.5
|
21.1
|
1.0
|
|
MG
|
B:MG403
|
3.5
|
35.0
|
1.0
|
|
C3D
|
B:AR6401
|
3.7
|
36.5
|
1.0
|
|
N
|
B:THR317
|
3.9
|
21.7
|
1.0
|
|
C2D
|
B:AR6401
|
3.9
|
36.4
|
1.0
|
|
C1D
|
B:AR6401
|
4.1
|
39.3
|
1.0
|
|
OD2
|
B:ASP78
|
4.1
|
24.3
|
1.0
|
|
CA
|
B:THR317
|
4.3
|
19.6
|
1.0
|
|
C4D
|
B:AR6401
|
4.4
|
37.2
|
1.0
|
|
O
|
B:HOH523
|
4.5
|
34.9
|
1.0
|
|
OD1
|
B:ASP78
|
4.5
|
23.5
|
1.0
|
|
CB
|
B:ASP314
|
4.5
|
26.5
|
1.0
|
|
CG2
|
B:THR317
|
4.5
|
19.7
|
1.0
|
|
CB
|
B:ASP316
|
4.6
|
24.4
|
1.0
|
|
C
|
B:ASP316
|
4.7
|
19.7
|
1.0
|
|
CG
|
B:ASP78
|
4.7
|
20.9
|
1.0
|
|
O4D
|
B:AR6401
|
4.8
|
38.8
|
1.0
|
|
OE2
|
B:GLU41
|
4.9
|
48.4
|
1.0
|
|
N
|
B:ASP316
|
4.9
|
22.8
|
1.0
|
|
OE1
|
B:GLU41
|
4.9
|
47.8
|
1.0
|
|
CA
|
B:ASP314
|
4.9
|
27.4
|
1.0
|
|
C
|
B:ASP314
|
5.0
|
28.5
|
1.0
|
|
CA
|
B:ASP316
|
5.0
|
22.8
|
1.0
|
|
O
|
B:ASP314
|
5.0
|
26.6
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 6d36
Go back to
Magnesium Binding Sites List in 6d36
Magnesium binding site 8 out
of 8 in the Structure of Human ARH3 Bound to Adp-Ribose and Magnesium
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Human ARH3 Bound to Adp-Ribose and Magnesium within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg403
b:35.0
occ:1.00
|
O
|
B:HOH501
|
2.2
|
35.4
|
1.0
|
|
O
|
B:HOH523
|
2.2
|
34.9
|
1.0
|
|
OD2
|
B:ASP78
|
2.3
|
24.3
|
1.0
|
|
OD2
|
B:ASP316
|
2.3
|
34.6
|
1.0
|
|
OD1
|
B:ASP77
|
2.4
|
23.8
|
1.0
|
|
OG1
|
B:THR76
|
2.4
|
15.0
|
1.0
|
|
CB
|
B:THR76
|
3.2
|
15.4
|
1.0
|
|
O2D
|
B:AR6401
|
3.2
|
36.1
|
1.0
|
|
CG
|
B:ASP316
|
3.2
|
30.7
|
1.0
|
|
O
|
B:HOH554
|
3.2
|
41.2
|
1.0
|
|
CG
|
B:ASP77
|
3.5
|
20.4
|
1.0
|
|
MG
|
B:MG402
|
3.5
|
33.8
|
1.0
|
|
CG
|
B:ASP78
|
3.5
|
20.9
|
1.0
|
|
OD1
|
B:ASP316
|
3.7
|
32.8
|
1.0
|
|
CG2
|
B:THR76
|
3.9
|
16.7
|
1.0
|
|
OD2
|
B:ASP77
|
4.0
|
22.5
|
1.0
|
|
N
|
B:ASP78
|
4.1
|
14.4
|
1.0
|
|
N
|
B:ASP77
|
4.1
|
15.0
|
1.0
|
|
OD1
|
B:ASP78
|
4.2
|
23.5
|
1.0
|
|
OG1
|
B:THR317
|
4.3
|
22.1
|
1.0
|
|
OD2
|
B:ASP34
|
4.3
|
18.2
|
1.0
|
|
CB
|
B:ASP316
|
4.3
|
24.4
|
1.0
|
|
CB
|
B:ASP78
|
4.5
|
14.6
|
1.0
|
|
CA
|
B:THR76
|
4.5
|
13.3
|
1.0
|
|
O3D
|
B:AR6401
|
4.5
|
35.8
|
1.0
|
|
O
|
B:GLY115
|
4.6
|
21.4
|
1.0
|
|
C2D
|
B:AR6401
|
4.6
|
36.4
|
1.0
|
|
C
|
B:THR76
|
4.6
|
12.7
|
1.0
|
|
CB
|
B:ASP77
|
4.7
|
17.0
|
1.0
|
|
CA
|
B:ASP77
|
4.7
|
13.1
|
1.0
|
|
C
|
B:ASP77
|
4.9
|
15.8
|
1.0
|
|
CA
|
B:ASP78
|
4.9
|
14.1
|
1.0
|
|
O1D
|
B:AR6401
|
4.9
|
40.6
|
1.0
|
|
O
|
B:ARG114
|
5.0
|
25.1
|
1.0
|
|
O
|
B:HOH550
|
5.0
|
37.9
|
1.0
|
|
Reference:
Y.Pourfarjam,
J.Ventura,
I.Kurinov,
A.Cho,
J.Moss,
I.K.Kim.
Structure of Human Adp-Ribosyl-Acceptor Hydrolase 3 Bound to Adp-Ribose Reveals A Conformational Switch That Enables Specific Substrate Recognition. J.Biol.Chem. V. 293 12350 2018.
ISSN: ESSN 1083-351X
PubMed: 29907568
DOI: 10.1074/JBC.RA118.003586
Page generated: Mon Sep 30 22:53:12 2024
|
