Magnesium in PDB 6d4g: N-Gtpase Domain of P190RHOGAP-A

The structure of N-Gtpase Domain of P190RHOGAP-A, PDB code: 6d4g was solved by A.L.Stiegler, T.J.Boggon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.03 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.690, 69.270, 154.060, 90.00, 90.00, 90.00
R / Rfree (%)	25 / 29

The binding sites of Magnesium atom in the N-Gtpase Domain of P190RHOGAP-A (pdb code 6d4g). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the N-Gtpase Domain of P190RHOGAP-A, PDB code: 6d4g:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the N-Gtpase Domain of P190RHOGAP-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of N-Gtpase Domain of P190RHOGAP-A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1002 b:65.8 occ:1.00 O2G A:GTP1001 1.8 90.4 1.0 OG A:SER36 2.0 80.0 1.0 OE2 A:GLU95 2.1 91.9 1.0 O A:HOH1101 2.1 51.3 1.0 O1B A:GTP1001 2.3 64.5 1.0 CD A:GLU95 3.1 90.5 1.0 CB A:SER36 3.2 73.0 1.0 PG A:GTP1001 3.3 70.3 1.0 OE1 A:GLU95 3.4 96.8 1.0 PB A:GTP1001 3.6 63.6 1.0 O3B A:GTP1001 3.8 65.9 1.0 OG A:SER56 3.9 98.5 1.0 N A:SER36 3.9 93.5 1.0 O1A A:GTP1001 4.0 86.1 1.0 CA A:SER36 4.1 91.8 1.0 O3G A:GTP1001 4.1 57.2 1.0 OG1 A:THR97 4.2 90.1 1.0 O1G A:GTP1001 4.2 75.1 1.0 CG A:GLU95 4.4 87.6 1.0 O A:HIS54 4.5 0.8 1.0 CB A:THR97 4.5 0.5 1.0 O2B A:GTP1001 4.5 57.1 1.0 CE A:LYS35 4.6 65.8 1.0 O3A A:GTP1001 4.7 65.4 1.0 CB A:LYS35 4.8 80.3 1.0 CG2 A:THR97 4.8 0.9 1.0 PA A:GTP1001 4.8 69.4 1.0 NZ A:LYS35 4.8 71.7 1.0 C A:LYS35 5.0 86.3 1.0

Magnesium binding site 2 out of 2 in the N-Gtpase Domain of P190RHOGAP-A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of N-Gtpase Domain of P190RHOGAP-A within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg301 b:90.3 occ:1.00 O1G B:GTP302 1.9 0.2 1.0 OG B:SER36 2.1 0.5 1.0 OE2 B:GLU95 2.1 0.3 1.0 O2B B:GTP302 2.3 84.1 1.0 CD B:GLU95 3.1 0.5 1.0 PG B:GTP302 3.3 77.7 1.0 CB B:SER36 3.4 0.2 1.0 OE1 B:GLU95 3.5 0.9 1.0 PB B:GTP302 3.6 99.7 1.0 OG B:SER56 3.8 0.3 1.0 O3G B:GTP302 3.8 76.5 1.0 O2A B:GTP302 3.8 96.8 1.0 O3B B:GTP302 3.9 0.7 1.0 N B:SER36 4.1 0.3 1.0 OG1 B:THR97 4.1 0.7 1.0 CB B:THR97 4.2 92.6 1.0 CA B:SER36 4.2 0.3 1.0 O B:HIS54 4.3 0.3 1.0 CG2 B:THR97 4.3 74.3 1.0 O2G B:GTP302 4.4 84.8 1.0 CG B:GLU95 4.4 0.2 1.0 O1B B:GTP302 4.6 0.3 1.0 O3A B:GTP302 4.7 89.5 1.0 CE B:LYS35 4.7 1.0 1.0 PA B:GTP302 4.7 98.9 1.0 NZ B:LYS35 4.9 88.4 1.0 O1A B:GTP302 4.9 0.5 1.0 CB B:LYS35 4.9 0.6 1.0

A.L.Stiegler, T.J.Boggon. The N-Terminal Gtpase Domain of P190RHOGAP Proteins Is A Pseudogtpase. Structure V. 26 1451 2018.
ISSN: ISSN 1878-4186
PubMed: 30174148
DOI: 10.1016/J.STR.2018.07.015