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Magnesium in PDB 6d6q: Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction

Enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction

All present enzymatic activity of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction:
3.6.4.13;

Other elements in 6d6q:

The structure of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction (pdb code 6d6q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction, PDB code: 6d6q:

Magnesium binding site 1 out of 1 in 6d6q

Go back to Magnesium Binding Sites List in 6d6q
Magnesium binding site 1 out of 1 in the Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Nuclear Exosome-MTR4 Rna Complex - Overall Reconstruction within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg2001

b:83.5
occ:1.00
O K:VAL478 2.4 0.6 1.0
C K:VAL478 3.6 0.6 1.0
O3' O:A61 3.7 0.9 1.0
C4' O:A61 3.8 0.9 1.0
CB K:ASP488 4.0 0.4 1.0
OD2 K:ASP488 4.2 0.4 1.0
C3' O:A61 4.3 0.9 1.0
C5' O:A61 4.3 0.9 1.0
OG K:SER477 4.3 0.2 1.0
N K:VAL478 4.4 0.6 1.0
N K:ASP479 4.5 0.7 1.0
CA K:VAL478 4.5 0.6 1.0
CG K:ASP488 4.5 0.4 1.0
CA K:ASP479 4.6 0.7 1.0
O2' O:A61 4.6 0.9 1.0
OP1 O:A62 4.7 99.3 1.0
CB K:VAL478 4.7 0.6 1.0
N K:ASP488 4.8 0.4 1.0
O4' O:A61 4.8 0.9 1.0
OD1 K:ASN487 4.8 0.2 1.0
CA K:ASP488 4.8 0.4 1.0
CG2 K:VAL663 4.8 0.1 1.0
P O:A62 4.9 99.3 1.0
O K:ASP488 4.9 0.4 1.0
CG1 K:ILE486 4.9 99.8 1.0

Reference:

E.M.Weick, M.R.Puno, K.Januszyk, J.C.Zinder, M.A.Dimattia, C.D.Lima. Helicase-Dependent Rna Decay Illuminated By A Cryo-Em Structure of A Human Nuclear Rna Exosome-MTR4 Complex. Cell V. 173 1663 2018.
ISSN: ISSN 1097-4172
PubMed: 29906447
DOI: 10.1016/J.CELL.2018.05.041
Page generated: Mon Dec 14 22:33:56 2020

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