Magnesium in PDB 6d9m: T4-Lysozyme Fusion to Geobacter Ggdef

All present enzymatic activity of T4-Lysozyme Fusion to Geobacter Ggdef:
3.2.1.17;

The structure of T4-Lysozyme Fusion to Geobacter Ggdef, PDB code: 6d9m was solved by Z.Hallberg, K.Doxzen, P.Kranzusch, M.Hammond, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.75 / 1.35
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	70.677, 111.645, 55.336, 90.00, 122.75, 90.00
R / Rfree (%)	15.5 / 17

The binding sites of Magnesium atom in the T4-Lysozyme Fusion to Geobacter Ggdef (pdb code 6d9m). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the T4-Lysozyme Fusion to Geobacter Ggdef, PDB code: 6d9m:

Magnesium binding site 1 out of 1 in the T4-Lysozyme Fusion to Geobacter Ggdef


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of T4-Lysozyme Fusion to Geobacter Ggdef within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg205 b:12.6 occ:1.00 O A:HOH365 2.0 19.2 1.0 OD1 A:ASP38 2.1 16.0 1.0 O6 A:POP204 2.1 20.0 1.0 O1 A:POP204 2.1 20.0 1.0 O A:LEU39 2.2 13.4 1.0 OD2 A:ASP81 2.2 14.8 1.0 CG A:ASP81 3.1 16.1 1.0 CG A:ASP38 3.2 18.1 1.0 P1 A:POP204 3.2 20.0 1.0 O A:HOH318 3.2 19.6 1.0 C A:LEU39 3.3 11.4 1.0 OD1 A:ASP81 3.3 18.6 1.0 P2 A:POP204 3.3 20.0 1.0 O3 A:POP204 3.5 20.0 1.0 O A:POP204 3.6 20.0 1.0 OD2 A:ASP38 3.7 24.6 1.0 NZ A:LYS152 3.8 22.3 1.0 N A:LEU39 3.9 13.0 1.0 O5 A:POP204 4.0 20.0 1.0 CA A:LEU39 4.1 13.2 1.0 C A:ASP38 4.2 13.5 1.0 N A:ASP40 4.4 11.4 1.0 O A:HOH444 4.4 31.6 1.0 CB A:PHE42 4.4 12.6 1.0 CB A:ASP38 4.5 14.7 1.0 CB A:ASP81 4.5 15.6 1.0 CB A:LEU39 4.5 13.4 1.0 N A:PHE42 4.5 12.1 1.0 O4 A:POP204 4.5 20.0 1.0 O2 A:POP204 4.6 20.0 1.0 CA A:ASP40 4.6 11.6 1.0 N A:PHE41 4.6 12.5 1.0 CE A:LYS152 4.6 21.8 1.0 O A:ASP38 4.6 13.2 1.0 CA A:ASP38 4.7 13.9 1.0 C A:ASP40 4.8 12.5 1.0 O A:ASP81 5.0 13.4 1.0

Z.F.Hallberg, C.H.Chan, T.A.Wright, P.J.Kranzusch, K.W.Doxzen, J.J.Park, D.R.Bond, M.C.Hammond. Structure and Mechanism of A Hypr Ggdef Enzyme That Activates Cgamp Signaling to Control Extracellular Metal Respiration. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 30964001
DOI: 10.7554/ELIFE.43959