Magnesium in PDB 6dgi: The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961

All present enzymatic activity of The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961:
6.3.2.4;

The structure of The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 6dgi was solved by K.Tan, M.Zhou, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.79 / 2.30
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	63.588, 64.875, 165.160, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21.9

The binding sites of Magnesium atom in the The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961 (pdb code 6dgi). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961, PDB code: 6dgi:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:35.0 occ:1.00 O A:HOH521 2.1 32.2 1.0 O A:HOH535 2.2 37.1 1.0 O A:HOH506 2.2 32.6 1.0 O A:HOH524 2.2 25.9 1.0 O A:HOH501 2.2 24.4 1.0 OD2 A:ASP281 3.9 36.5 1.0 OE2 A:GLU294 4.0 41.5 1.0 OE2 A:GLU206 4.2 47.3 1.0 OE2 A:GLU204 4.2 53.5 1.0 ND2 A:ASN293 4.5 26.4 1.0 OE1 A:GLU204 4.6 49.0 1.0 O A:HOH531 4.7 34.6 1.0 NH2 A:ARG279 4.7 30.6 1.0 CD A:GLU204 4.7 50.6 1.0 CG A:ASP281 4.9 40.5 1.0

Magnesium binding site 2 out of 2 in the The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:42.9 occ:1.00 O B:HOH518 2.0 34.2 1.0 O B:HOH508 2.0 34.8 1.0 O B:HOH563 2.1 52.6 1.0 O B:HOH501 2.3 36.7 1.0 O B:HOH522 2.4 40.0 1.0 OE2 B:GLU204 3.8 53.0 1.0 OE2 B:GLU206 4.1 33.0 1.0 OE1 B:GLU204 4.1 43.9 1.0 OD2 B:ASP281 4.2 36.7 1.0 CD B:GLU204 4.3 47.5 1.0 O B:HOH541 4.5 22.2 1.0 OE1 B:GLU294 4.6 63.1 1.0 ND2 B:ASN293 4.7 24.7 1.0 NH2 B:ARG279 5.0 24.4 1.0

K.Tan, M.Zhou, A.Joachimiak. The Crystal Structure of D-Alanyl-Alanine Synthetase A From Vibrio Cholerae O1 Biovar Eltor Str. N16961 To Be Published.