Atomistry » Magnesium » PDB 6d9r-6dmc » 6dlu
Atomistry »
  Magnesium »
    PDB 6d9r-6dmc »
      6dlu »

Magnesium in PDB 6dlu: Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State

Enzymatic activity of Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State

All present enzymatic activity of Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State:
3.6.5.5;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State (pdb code 6dlu). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State, PDB code: 6dlu:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6dlu

Go back to Magnesium Binding Sites List in 6dlu
Magnesium binding site 1 out of 2 in the Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg802

b:39.8
occ:1.00
O1B B:GCP801 1.9 42.7 1.0
OG1 B:THR65 2.0 37.2 1.0
O2G B:GCP801 2.0 42.7 1.0
CB B:THR65 2.6 37.2 1.0
OG B:SER45 2.8 37.5 1.0
PB B:GCP801 3.0 42.7 1.0
PG B:GCP801 3.0 42.7 1.0
O1G B:GCP801 3.2 42.7 1.0
O2B B:GCP801 3.3 42.7 1.0
C3B B:GCP801 3.5 42.7 1.0
N B:THR65 3.5 37.2 1.0
CA B:THR65 3.6 37.2 1.0
CG2 B:THR65 3.7 37.2 1.0
CB B:SER45 3.8 37.5 1.0
O3A B:GCP801 4.4 42.7 1.0
O3G B:GCP801 4.4 42.7 1.0
N B:SER45 4.4 37.5 1.0
OD2 B:ASP136 4.4 44.3 1.0
O B:PRO58 4.5 40.1 1.0
O1A B:GCP801 4.5 42.7 1.0
OD1 B:ASP136 4.7 44.3 1.0
CB B:VAL64 4.7 35.5 1.0
O B:THR65 4.7 37.2 1.0
C B:THR65 4.7 37.2 1.0
C B:VAL64 4.7 35.5 1.0
CA B:SER45 4.7 37.5 1.0
CE B:LYS44 4.7 36.6 1.0
NZ B:LYS44 4.9 36.6 1.0
PA B:GCP801 4.9 42.7 1.0
CG1 B:VAL64 4.9 35.5 1.0
CG B:ASP136 5.0 44.3 1.0
O2A B:GCP801 5.0 42.7 1.0

Magnesium binding site 2 out of 2 in 6dlu

Go back to Magnesium Binding Sites List in 6dlu
Magnesium binding site 2 out of 2 in the Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em of the Gmppcp-Bound Human Dynamin-1 Polymer Assembled on the Membrane in the Constricted State within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Mg802

b:38.3
occ:1.00
OG1 P:THR65 2.0 39.2 1.0
OG P:SER45 2.1 37.9 1.0
O2B P:GCP801 2.3 49.8 1.0
O1G P:GCP801 2.8 49.8 1.0
CB P:THR65 3.1 39.2 1.0
CB P:SER45 3.2 37.9 1.0
PB P:GCP801 3.6 49.8 1.0
O P:PRO58 3.8 42.0 1.0
PG P:GCP801 3.8 49.8 1.0
OD2 P:ASP136 3.9 38.4 1.0
CG2 P:THR65 4.0 39.2 1.0
O3G P:GCP801 4.1 49.8 1.0
O1B P:GCP801 4.1 49.8 1.0
N P:SER45 4.1 37.9 1.0
C3B P:GCP801 4.2 49.8 1.0
N P:THR65 4.2 39.2 1.0
CA P:THR65 4.2 39.2 1.0
CA P:SER45 4.2 37.9 1.0
O2A P:GCP801 4.3 49.8 1.0
OD1 P:ASP136 4.4 38.4 1.0
CG P:ASP136 4.6 38.4 1.0
NZ P:LYS44 4.6 54.9 1.0
CE P:LYS44 4.7 54.9 1.0
O3A P:GCP801 4.8 49.8 1.0
C P:PRO58 5.0 42.0 1.0

Reference:

L.Kong, K.A.Sochacki, H.Wang, S.Fang, B.Canagarajah, A.D.Kehr, W.J.Rice, M.P.Strub, J.W.Taraska, J.E.Hinshaw. Cryo-Em of the Dynamin Polymer Assembled on Lipid Membrane. Nature V. 560 258 2018.
ISSN: ESSN 1476-4687
PubMed: 30069048
DOI: 10.1038/S41586-018-0378-6
Page generated: Mon Sep 30 23:12:03 2024

Last articles

Cl in 2QKF
Cl in 2QLT
Cl in 2QIO
Cl in 2QKQ
Cl in 2QKN
Cl in 2QJW
Cl in 2QKK
Cl in 2QJV
Cl in 2QK4
Cl in 2QJY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy