Magnesium in PDB 6dx3: Crystal Structure of the Viral Otu Domain Protease From Taggert Virus

The structure of Crystal Structure of the Viral Otu Domain Protease From Taggert Virus, PDB code: 6dx3 was solved by J.V.Dzimianski, B.S.Beldon, C.M.Daczkowski, O.Y.Goodwin, S.D.Pegan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.46 / 2.05
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	47.163, 60.948, 66.501, 64.95, 89.84, 84.31
R / Rfree (%)	22.7 / 25

The binding sites of Magnesium atom in the Crystal Structure of the Viral Otu Domain Protease From Taggert Virus (pdb code 6dx3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Viral Otu Domain Protease From Taggert Virus, PDB code: 6dx3:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of the Viral Otu Domain Protease From Taggert Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Viral Otu Domain Protease From Taggert Virus within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg201 b:56.3 occ:1.00 O A:HOH402 2.0 55.9 1.0 O A:HOH316 2.3 63.5 1.0 OD2 A:ASP56 4.5 42.1 1.0 OD1 A:ASP56 4.9 40.6 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of the Viral Otu Domain Protease From Taggert Virus


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Viral Otu Domain Protease From Taggert Virus within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg201 b:54.1 occ:1.00 O D:HOH325 2.3 49.6 1.0 O D:HOH314 2.5 54.4 1.0 O D:HOH373 2.7 47.5 1.0 O B:HOH288 3.0 52.9 1.0 OD2 D:ASP56 4.3 43.1 1.0 OD1 D:ASP56 4.4 41.4 1.0 O D:HOH368 4.5 46.0 1.0 CG D:ASP56 4.8 40.5 1.0

J.V.Dzimianski, B.S.Beldon, C.M.Daczkowski, O.Y.Goodwin, F.E.M.Scholte, E.Bergeron, S.D.Pegan. Probing the Impact of Nairovirus Genomic Diversity on Viral Ovarian Tumor Domain Protease (Votu) Structure and Deubiquitinase Activity. Plos Pathog. V. 15 07515 2019.
ISSN: ESSN 1553-7374
PubMed: 30629698
DOI: 10.1371/JOURNAL.PPAT.1007515