Magnesium in PDB 6e0l: Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp

The structure of Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp, PDB code: 6e0l was solved by J.B.Eaglesham, A.T.Whiteley, C.C.De Oliveira Mann, B.R.Morehouse, E.A.Nieminen, D.S.King, A.S.Y.Lee, J.J.Mekalanos, P.J.Kranzusch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.92 / 2.25
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.647, 65.652, 88.855, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.7

The binding sites of Magnesium atom in the Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp (pdb code 6e0l). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp, PDB code: 6e0l:

Magnesium binding site 1 out of 1 in the Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Rhodothermus Marinus Cdne C-Ump-Amp Synthase with Apcpp and Upnpp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg301 b:20.9 occ:1.00 O1B A:APC302 1.9 24.3 1.0 OD2 A:ASP62 2.1 30.1 1.0 O1A A:APC302 2.1 26.1 1.0 O A:HOH462 2.1 23.7 1.0 O3G A:APC302 2.2 23.6 1.0 O A:HOH453 2.2 24.0 1.0 CG A:ASP62 3.1 27.5 1.0 PB A:APC302 3.2 23.6 1.0 PA A:APC302 3.4 26.9 1.0 PG A:APC302 3.4 22.8 1.0 OD1 A:ASP62 3.4 29.8 1.0 O3B A:APC302 3.7 23.6 1.0 C5' A:APC302 3.9 31.1 1.0 O A:HOH431 3.9 45.6 1.0 C3A A:APC302 3.9 26.8 1.0 O A:ASP60 4.0 18.8 1.0 OG A:SER48 4.1 17.2 1.0 O1G A:APC302 4.1 23.9 1.0 N A:SER48 4.1 17.2 1.0 O5' A:APC302 4.2 31.0 1.0 O A:HOH478 4.2 19.1 1.0 O2B A:APC302 4.3 24.5 1.0 CB A:ASP62 4.5 24.6 1.0 O2A A:APC302 4.5 29.1 1.0 CA A:GLY47 4.6 17.0 1.0 O2G A:APC302 4.6 22.9 1.0 CB A:SER48 4.6 16.7 1.0 C A:GLY47 4.9 17.1 1.0

A.T.Whiteley, J.B.Eaglesham, C.C.De Oliveira Mann, B.R.Morehouse, B.Lowey, E.A.Nieminen, O.Danilchanka, D.S.King, A.S.Y.Lee, J.J.Mekalanos, P.J.Kranzusch. Bacterial Cgas-Like Enzymes Synthesize Diverse Nucleotide Signals. Nature V. 567 194 2019.
ISSN: ESSN 1476-4687
PubMed: 30787435
DOI: 10.1038/S41586-019-0953-5