Magnesium in PDB 6e20: Crystal Structure of the Dario Rerio Galectin-1-L2

Protein crystallography data

The structure of Crystal Structure of the Dario Rerio Galectin-1-L2, PDB code: 6e20 was solved by A.Ghosh, M.A.Bianchet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.81 / 2.00
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 40.438, 40.438, 303.639, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 23.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of the Dario Rerio Galectin-1-L2 (pdb code 6e20). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of the Dario Rerio Galectin-1-L2, PDB code: 6e20:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 6e20

Go back to Magnesium Binding Sites List in 6e20
Magnesium binding site 1 out of 2 in the Crystal Structure of the Dario Rerio Galectin-1-L2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of the Dario Rerio Galectin-1-L2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg203

b:33.7
occ:1.00
O A:GLY53 2.0 25.6 1.0
O A:HOH373 2.1 28.4 1.0
O A:HOH368 2.3 33.0 1.0
O A:HOH322 2.3 32.1 1.0
C A:GLY53 3.1 23.0 1.0
CA A:GLY53 3.6 24.4 1.0
N A:ASP54 4.2 23.2 1.0
OE1 A:GLN55 4.3 26.3 1.0
O A:HOH350 4.3 30.7 1.0
CA A:ASP54 4.6 25.3 1.0
NE2 A:GLN55 4.8 25.6 1.0
OD1 A:ASP54 4.9 27.8 1.0
CD A:GLN55 4.9 25.8 1.0

Magnesium binding site 2 out of 2 in 6e20

Go back to Magnesium Binding Sites List in 6e20
Magnesium binding site 2 out of 2 in the Crystal Structure of the Dario Rerio Galectin-1-L2


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of the Dario Rerio Galectin-1-L2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg204

b:32.5
occ:1.00
OE2 A:GLU94 2.3 29.3 1.0
O A:HOH313 2.3 19.9 1.0
O A:HOH306 2.4 25.1 1.0
CD A:GLU94 3.3 24.8 1.0
OE1 A:GLU94 3.7 29.7 1.0
CG A:GLU94 4.6 25.6 1.0
O A:HOH365 4.7 39.6 1.0
O A:HOH371 5.0 54.3 1.0

Reference:

A.Ghosh, A.Banerjee, L.M.Amzel, G.R.Vasta, M.A.Bianchet. Structure of the Zebrafish Galectin-1-L2 and Model of Its Interaction with the Infectious Hematopoietic Necrosis Virus (Ihnv) Envelope Glycoprotein. Glycobiology V. 29 419 2019.
ISSN: ESSN 1460-2423
PubMed: 30834446
DOI: 10.1093/GLYCOB/CWZ015
Page generated: Mon Dec 14 22:37:51 2020

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