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Magnesium in PDB 6ee8: Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter

Enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter:
2.7.7.6;

Other elements in 6ee8:

The structure of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter (pdb code 6ee8). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter, PDB code: 6ee8:

Magnesium binding site 1 out of 1 in 6ee8

Go back to Magnesium Binding Sites List in 6ee8
Magnesium binding site 1 out of 1 in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2002

b:0.2
occ:1.00
 OD1 D:ASP537 2.1 0.4 1.0
OD1 D:ASP535 2.1 0.1 1.0
OD2 D:ASP537 2.1 0.4 1.0
OD2 D:ASP539 2.4 0.1 1.0
CG D:ASP537 2.4 0.4 1.0
CG D:ASP535 2.7 0.1 1.0
OD2 D:ASP535 2.7 0.1 1.0
CG D:ASP539 3.1 0.1 1.0
OD1 D:ASP539 3.4 0.1 1.0
CB D:ASP537 3.9 0.4 1.0
CB D:ASP535 4.1 0.1 1.0
O D:ASP535 4.1 0.1 1.0
CB D:ASP539 4.4 0.1 1.0
C D:ASP535 4.5 0.1 1.0
N D:ASP537 4.6 0.4 1.0
N D:ASP535 4.6 0.1 1.0
CA D:ASP535 4.7 0.1 1.0
CA D:ASP537 4.7 0.4 1.0
NH2 D:ARG500 4.9 0.9 1.0
N D:ASP539 5.0 0.1 1.0

Reference:

H.Boyaci, J.Chen, R.Jansen, S.A.Darst, E.A.Campbell. Structures of An Rna Polymerase Promoter Melting Intermediate Elucidate Dna Unwinding. Nature V. 565 382 2019.
ISSN: ESSN 1476-4687
PubMed: 30626968
DOI: 10.1038/S41586-018-0840-5
Page generated: Mon Sep 30 23:54:30 2024

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