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Magnesium in PDB 6eec: Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin

Enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin

All present enzymatic activity of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin:
2.7.7.6;

Other elements in 6eec:

The structure of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin (pdb code 6eec). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin, PDB code: 6eec:

Magnesium binding site 1 out of 1 in 6eec

Go back to Magnesium Binding Sites List in 6eec
Magnesium binding site 1 out of 1 in the Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Mycobacterium Tuberculosis Rnap Promoter Unwinding Intermediate Complex with Rbpa/Card and AP3 Promoter Captured By Corallopyronin within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg2002

b:60.2
occ:1.00
 OD1 D:ASP535 2.0 56.5 1.0
OD2 D:ASP539 2.0 55.8 1.0
OD1 D:ASP537 2.0 56.2 1.0
OD2 D:ASP537 2.2 56.2 1.0
CG D:ASP537 2.4 56.2 1.0
CG D:ASP539 2.6 55.8 1.0
OD1 D:ASP539 2.8 55.8 1.0
CG D:ASP535 2.9 56.5 1.0
OD2 D:ASP535 3.2 56.5 1.0
CB D:ASP537 3.9 56.2 1.0
CB D:ASP539 4.0 55.8 1.0
O D:ASP535 4.2 56.5 1.0
CB D:ASP535 4.3 56.5 1.0
N D:ASP537 4.4 56.2 1.0
NH2 D:ARG500 4.4 52.9 1.0
N D:ASP535 4.4 56.5 1.0
C D:ASP535 4.5 56.5 1.0
CA D:ASP537 4.6 56.2 1.0
CA D:ASP535 4.7 56.5 1.0
N D:ASP539 4.7 55.8 1.0
CA D:ASP539 4.8 55.8 1.0
C D:ASP537 4.9 56.2 1.0

Reference:

H.Boyaci, J.Chen, R.Jansen, S.A.Darst, E.A.Campbell. Structures of An Rna Polymerase Promoter Melting Intermediate Elucidate Dna Unwinding. Nature V. 565 382 2019.
ISSN: ESSN 1476-4687
PubMed: 30626968
DOI: 10.1038/S41586-018-0840-5
Page generated: Mon Sep 30 23:55:04 2024

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