Magnesium in PDB 6ehe: OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae

The structure of OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae, PDB code: 6ehe was solved by B.Van Den Berg, M.Pathania, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.27 / 2.31
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	43.480, 128.410, 171.680, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 27.3

The binding sites of Magnesium atom in the OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae (pdb code 6ehe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae, PDB code: 6ehe:

Magnesium binding site 1 out of 1 in the OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of OMPTDELTAL8 (Loop L8 Deletion Mutant of Ompt), An Outer Membrane Protein of Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg409 b:58.0 occ:1.00 NH2 A:ARG307 2.7 48.7 1.0 O A:TYR101 3.5 43.5 1.0 CZ A:ARG307 4.0 51.8 1.0 NH2 A:ARG18 4.1 46.7 1.0 CA A:TYR101 4.2 33.5 1.0 CD1 A:TYR101 4.2 37.2 1.0 C A:TYR101 4.2 36.9 1.0 NH1 A:ARG307 4.5 51.6 1.0 CZ A:ARG18 4.5 47.8 1.0 NH1 A:ARG18 4.6 43.8 1.0 CB A:TYR101 4.7 39.0 1.0 O A:SER100 4.8 38.6 1.0 O A:HOH516 4.8 41.9 1.0 CG A:TYR101 4.8 39.3 1.0 CE1 A:TYR101 4.9 36.2 1.0

M.Pathania, S.Acosta-Gutierrez, S.P.Bhamidimarri, A.Basle, M.Winterhalter, M.Ceccarelli, B.Van Den Berg. Unusual Constriction Zones in the Major Porins Ompu and Ompt From Vibrio Cholerae. Structure V. 26 708 2018.
ISSN: ISSN 1878-4186
PubMed: 29657131
DOI: 10.1016/J.STR.2018.03.010