Magnesium in PDB 6exv: Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin

Enzymatic activity of Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin

All present enzymatic activity of Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin:
2.7.7.6;

Other elements in 6exv:

The structure of Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin (pdb code 6exv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin, PDB code: 6exv:

Magnesium binding site 1 out of 1 in 6exv

Go back to Magnesium Binding Sites List in 6exv
Magnesium binding site 1 out of 1 in the Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2003

b:9.9
occ:1.00
O3' P:C20 2.1 4.2 1.0
OD1 A:ASP495 2.1 17.7 1.0
OD2 A:ASP495 2.2 17.7 1.0
CG A:ASP495 2.4 17.7 1.0
OD1 A:ASP497 2.8 16.3 1.0
OD1 A:ASP499 3.4 19.5 1.0
C3' P:C20 3.5 4.2 1.0
CG A:ASP497 3.9 16.3 1.0
OD2 A:ASP499 3.9 19.5 1.0
CB A:ASP495 4.0 17.7 1.0
CG A:ASP499 4.0 19.5 1.0
O2' P:C20 4.1 4.2 1.0
OD2 A:ASP497 4.1 16.3 1.0
C2' P:C20 4.3 4.2 1.0
C4' P:C20 4.3 4.2 1.0
O A:ASP495 4.6 17.7 1.0
O A:ASP497 4.6 16.3 1.0
CA A:ASP495 4.8 17.7 1.0
N A:ASP495 4.8 17.7 1.0
C A:ASP495 4.9 17.7 1.0
C5' P:C20 4.9 4.2 1.0

Reference:

X.Liu, L.Farnung, C.Wigge, P.Cramer. Cryo-Em Structure of A Mammalian Rna Polymerase II Elongation Complex Inhibited By Alpha-Amanitin. J. Biol. Chem. V. 293 7189 2018.
ISSN: ESSN 1083-351X
PubMed: 29550768
DOI: 10.1074/JBC.RA118.002545
Page generated: Mon Dec 14 22:39:58 2020

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