Magnesium in PDB 6fai: Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit

All present enzymatic activity of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit:
2.7.11.1;

The structure of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 46;

Binding sites:

The binding sites of Magnesium atom in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit (pdb code 6fai). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 46 binding sites of Magnesium where determined in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit, PDB code: 6fai:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3001 b:18.5 occ:1.00 OP2 2:A621 1.9 31.9 1.0 OP2 2:A620 2.3 30.4 1.0 OP2 2:A619 2.7 28.4 1.0 P 2:A621 3.2 39.7 1.0 P 2:A620 3.6 30.6 1.0 OP1 2:A621 3.7 32.7 1.0 OP1 2:U618 3.8 31.4 1.0 P 2:A619 4.0 32.7 1.0 O5' 2:A620 4.0 25.6 1.0 OP1 2:A620 4.2 31.0 1.0 O5' 2:A621 4.2 35.2 1.0 O3' 2:A620 4.3 32.6 1.0 OP1 2:A619 4.5 31.8 1.0 C3' 2:A620 4.5 30.2 1.0 N7 2:A621 4.6 26.2 1.0 C5' 2:A619 4.7 24.6 1.0 P 2:U618 4.7 34.0 1.0 O5' 2:A619 4.7 25.9 1.0 C8 2:A621 4.7 25.0 1.0 O5' 2:U618 4.8 23.8 1.0 O3' 2:A619 4.8 27.9 1.0 C2 2:A1030 4.9 28.6 1.0 C5' 2:A620 4.9 29.9 1.0 OP2 2:U618 4.9 30.8 1.0

Magnesium binding site 2 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3002 b:62.2 occ:1.00 OP1 2:A62 2.8 56.4 1.0 P 2:A62 4.2 58.2 1.0 O4 2:U60 4.4 58.8 1.0 OP2 2:U82 4.5 0.3 1.0 C4 2:U60 4.8 55.2 1.0 OP2 2:A62 4.8 61.2 1.0 C5 2:U60 4.9 46.7 1.0 O3' 2:A61 4.9 71.9 1.0

Magnesium binding site 3 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3003 b:13.1 occ:1.00 OP2 2:G95 2.2 24.8 1.0 P 2:G95 3.6 21.4 1.0 O6 2:G96 4.0 21.9 1.0 O5' 2:G95 4.0 21.9 1.0 N7 2:G96 4.2 22.0 1.0 OP1 2:G95 4.3 24.0 1.0 OP1 2:U94 4.4 21.9 1.0 N7 2:G95 4.6 23.7 1.0 O5' 2:U94 4.6 19.6 1.0 C8 2:G95 4.6 23.3 1.0 O3' 2:U94 4.8 25.6 1.0 C6 2:G96 4.8 19.8 1.0 P 2:U94 4.9 24.5 1.0 OP2 2:U94 4.9 23.4 1.0 C5 2:G96 4.9 20.9 1.0

Magnesium binding site 4 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3004 b:13.1 occ:1.00 OP2 2:A401 1.8 19.9 1.0 P 2:A401 3.2 20.4 1.0 OP1 2:A387 3.6 20.1 1.0 O5' 2:A401 3.7 21.9 1.0 O2 2:C402 4.1 25.8 1.0 OP1 2:A401 4.1 19.0 1.0 O3' 2:A400 4.3 22.3 1.0 O4' 2:C402 4.4 30.7 1.0 O6 2:G392 4.5 31.6 1.0 C2 2:C402 4.6 25.0 1.0 P 2:A387 4.6 19.8 1.0 O6 2:G404 4.7 29.4 1.0 C3' 2:A401 4.8 23.4 1.0 N4 2:C405 4.8 28.2 1.0 OP2 2:A387 4.8 24.5 1.0 OP2 2:C402 4.8 24.3 1.0 C2' 2:A401 5.0 25.3 1.0 C5' 2:A401 5.0 21.4 1.0 C1' 2:C402 5.0 27.3 1.0

Magnesium binding site 5 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3005 b:44.5 occ:1.00 OP1 2:A550 2.5 44.5 1.0 N7 2:G551 3.6 63.5 1.0 O6 2:G551 3.9 63.3 1.0 P 2:A550 4.0 40.9 1.0 C5 2:G551 4.3 59.8 1.0 C6 2:G551 4.4 60.6 1.0 O6 2:G553 4.5 49.5 1.0 N7 2:G552 4.5 48.9 1.0 O6 2:G552 4.5 49.2 1.0 C8 2:G551 4.6 62.5 1.0 OP1 2:G551 4.6 53.7 1.0 MG 2:MG3027 4.7 36.8 1.0 O5' 2:A550 4.7 47.1 1.0 OP2 2:A550 4.7 44.4 1.0 C5' 2:A550 4.8 46.6 1.0 O3' 2:G549 4.9 42.0 1.0

Magnesium binding site 6 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3006 b:13.1 occ:1.00 OP1 2:G403 2.3 32.7 1.0 O6 2:G95 3.6 21.2 1.0 P 2:G403 3.8 36.0 1.0 OP2 2:A93 4.1 25.4 1.0 O5' 2:C402 4.4 27.1 1.0 O3' 2:C402 4.4 30.3 1.0 C6 2:G95 4.6 18.7 1.0 NH2 E:ARG3 4.6 31.1 1.0 O5' 2:G403 4.6 33.8 1.0 OP2 2:G403 4.7 32.0 1.0 N7 2:G403 4.8 34.2 1.0 N6 2:A387 4.8 21.1 1.0 OP1 2:C402 4.9 26.2 1.0

Magnesium binding site 7 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3007 b:13.6 occ:1.00 OP2 2:G91 2.5 28.6 1.0 O6 2:G398 2.6 25.7 1.0 P 2:G91 3.6 29.6 1.0 C6 2:G398 3.8 25.9 1.0 O5' 2:G91 3.8 26.9 1.0 O2' 2:G396 4.2 27.1 1.0 N1 2:G398 4.3 25.8 1.0 OP1 2:G91 4.3 27.7 1.0 N1 2:A93 4.4 22.4 1.0 OP2 2:A92 4.4 27.7 1.0 N7 2:A92 4.5 32.8 1.0 C8 2:G91 4.5 29.4 1.0 N7 2:G91 4.6 31.3 1.0 N6 2:A93 4.9 25.8 1.0 O3' 2:C90 5.0 24.9 1.0 C6 2:A93 5.0 21.2 1.0 C5 2:G398 5.0 24.4 1.0

Magnesium binding site 8 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3008 b:13.1 occ:1.00 OP2 2:A865 3.4 34.6 1.0 OP1 2:G1035 4.2 35.4 1.0 OP1 2:A1036 4.3 32.1 1.0 O N:LYS9 4.4 27.9 1.0 CG2 N:ILE11 4.4 41.7 1.0 OP1 2:G866 4.5 28.8 1.0 O2' 2:U864 4.7 37.4 1.0 O3' 2:A865 4.8 23.2 1.0 P 2:A865 4.8 34.0 1.0 CA N:GLY2 4.9 35.9 1.0

Magnesium binding site 9 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3009 b:13.1 occ:1.00 OP2 2:A1025 2.1 30.7 1.0 P 2:A1025 3.3 29.7 1.0 OP2 2:G624 3.7 35.0 1.0 OP1 2:A1025 3.7 24.8 1.0 C5' 2:A1025 4.0 24.8 1.0 OP1 2:A1026 4.2 25.2 1.0 O5' 2:A1025 4.2 26.3 1.0 OP1 2:G624 4.5 37.1 1.0 O3' 2:U1024 4.5 27.8 1.0 N7 2:A1027 4.5 20.6 1.0 P 2:G624 4.6 39.3 1.0 OP2 2:A1026 4.7 26.7 1.0 P 2:A1026 5.0 31.2 1.0 N6 2:A1027 5.0 24.4 1.0

Magnesium binding site 10 out of 46 in the Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg3010 b:13.1 occ:1.00 OP2 2:C427 3.5 19.0 1.0 O6 2:G429 3.7 38.1 1.0 N7 2:A428 4.1 30.5 1.0 N7 2:G429 4.5 31.6 1.0 C8 2:A428 4.6 31.0 1.0 O2' 2:C424 4.6 19.8 1.0 OP2 2:A428 4.6 22.5 1.0 C5 2:C427 4.6 23.4 1.0 C6 2:G429 4.7 34.4 1.0 O2 2:C424 4.7 30.5 1.0 P 2:C427 4.8 18.3 1.0 O5' 2:C427 4.9 19.1 1.0 C2' 2:C424 5.0 18.9 1.0 C5 2:G429 5.0 28.8 1.0

A.Scaiola, C.Pena, M.Weisser, D.Bohringer, M.Leibundgut, P.Klingauf-Nerurkar, S.Gerhardy, V.G.Panse, N.Ban. Structure of A Eukaryotic Cytoplasmic Pre-40S Ribosomal Subunit. Embo J. V. 37 2018.
ISSN: ESSN 1460-2075
PubMed: 29459436
DOI: 10.15252/EMBJ.201798499