Magnesium in PDB 6fbe: Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide.

Enzymatic activity of Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide.

All present enzymatic activity of Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide.:
2.7.7.7;

Protein crystallography data

The structure of Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide., PDB code: 6fbe was solved by H.M.Kropp, K.Diederichs, A.Marx, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.97 / 1.59
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 108.480, 108.480, 90.309, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 20.3

Other elements in 6fbe:

The structure of Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide. also contains other interesting chemical elements:

Manganese (Mn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide. (pdb code 6fbe). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide., PDB code: 6fbe:

Magnesium binding site 1 out of 1 in 6fbe

Go back to Magnesium Binding Sites List in 6fbe
Magnesium binding site 1 out of 1 in the Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Klentaq Dna Polymerase Processing A Modified Primer - Bearing the Modification Upstream at the Third Primer Nucleotide. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg905

b:27.0
occ:1.00
 OE2 A:GLU462 2.1 36.1 0.4
OE1 A:GLU465 2.1 41.9 0.5
O A:HOH1197 2.2 37.0 1.0
O A:HOH1169 2.2 42.6 1.0
OE1 A:GLU465 3.0 45.4 0.6
CD A:GLU462 3.2 36.0 0.4
CD A:GLU465 3.3 54.7 0.5
CD A:GLU465 3.5 55.5 0.6
OE2 A:GLU465 3.6 31.6 0.6
HA A:GLU462 3.7 32.4 0.4
HA A:GLU462 3.7 33.1 0.6
OE2 A:GLU465 3.7 56.9 0.5
HG2 A:GLU462 3.8 37.4 0.4
O A:HOH1373 4.1 49.5 1.0
CG A:GLU462 4.1 31.1 0.4
OE1 A:GLU462 4.1 27.8 0.4
HB2 A:GLU462 4.4 33.2 0.6
CA A:GLU462 4.5 26.9 0.4
HG3 A:GLU465 4.5 65.8 0.5
CG A:GLU465 4.5 54.8 0.5
CA A:GLU462 4.5 27.6 0.6
HG3 A:GLU465 4.6 69.0 0.6
O A:HOH1118 4.6 27.4 1.0
CG A:GLU465 4.6 57.5 0.6
HG3 A:GLU462 4.7 0.9 0.6
CB A:GLU462 4.8 26.5 0.4
N A:GLU462 4.8 26.6 0.4
N A:GLU462 4.8 25.3 0.6
HB2 A:GLU465 4.9 37.2 0.6
O A:LEU461 4.9 26.5 1.0
HG3 A:GLU462 4.9 37.4 0.4
HB2 A:GLU465 4.9 42.8 0.5
HB3 A:LEU461 4.9 30.8 1.0
CB A:GLU462 4.9 27.6 0.6

Reference:

H.M.Kropp, S.L.Durr, C.Peter, K.Diederichs, A.Marx. Snapshots of A Modified Nucleotide Moving Through the Confines of A Dna Polymerase. Proc. Natl. Acad. Sci. V. 115 9992 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 30224478
DOI: 10.1073/PNAS.1811518115
Page generated: Mon Dec 14 22:41:00 2020

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