Magnesium in PDB 6fkf: Chloroplast F1FO Conformation 1

All present enzymatic activity of Chloroplast F1FO Conformation 1:
3.6.3.14;

The binding sites of Magnesium atom in the Chloroplast F1FO Conformation 1 (pdb code 6fkf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Chloroplast F1FO Conformation 1, PDB code: 6fkf:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Chloroplast F1FO Conformation 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Chloroplast F1FO Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:5.2 occ:1.00 O A:HOH702 2.0 6.3 1.0 O A:HOH701 2.1 5.1 1.0 OG1 A:THR177 2.1 5.5 1.0 O2B A:ATP600 2.3 6.8 1.0 O2G A:ATP600 2.7 6.8 1.0 O3G A:ATP600 3.3 6.8 1.0 PG A:ATP600 3.5 6.8 1.0 CB A:THR177 3.5 5.5 1.0 OD1 A:ASP262 3.5 5.9 1.0 PB A:ATP600 3.6 6.8 1.0 O3B A:ATP600 4.0 6.8 1.0 OD2 A:ASP262 4.1 5.9 1.0 CG A:ASP262 4.2 5.9 1.0 N A:THR177 4.3 5.5 1.0 CG2 A:THR177 4.3 5.5 1.0 CA A:THR177 4.4 5.5 1.0 O1B A:ATP600 4.5 6.8 1.0 NZ A:LYS176 4.7 5.5 1.0 O3A A:ATP600 4.8 6.8 1.0 NE2 A:GLN201 4.8 5.8 1.0 O1G A:ATP600 4.9 6.8 1.0

Magnesium binding site 2 out of 5 in the Chloroplast F1FO Conformation 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Chloroplast F1FO Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:13.1 occ:1.00 OG1 C:THR177 2.1 8.2 1.0 O C:HOH701 2.1 8.4 1.0 O2G C:ATP600 2.2 14.2 1.0 O2B C:ATP600 2.4 14.2 1.0 CB C:THR177 3.4 8.2 1.0 PG C:ATP600 3.4 14.2 1.0 PB C:ATP600 3.6 14.2 1.0 O3B C:ATP600 3.6 14.2 1.0 OD2 C:ASP262 3.7 5.1 1.0 CG2 C:THR177 4.0 8.2 1.0 NE2 C:GLN201 4.1 5.9 1.0 O3G C:ATP600 4.1 14.2 1.0 O C:HOH706 4.1 11.4 1.0 O2A C:ATP600 4.3 14.2 1.0 O C:HOH704 4.3 10.2 1.0 OE1 C:GLN201 4.5 5.9 1.0 OD1 C:ASP262 4.5 5.1 1.0 CD C:GLN201 4.5 5.9 1.0 CA C:THR177 4.5 8.2 1.0 CG C:ASP262 4.5 5.1 1.0 N C:THR177 4.5 8.2 1.0 O3A C:ATP600 4.6 14.2 1.0 OG C:SER205 4.6 9.0 1.0 O1G C:ATP600 4.6 14.2 1.0 O1B C:ATP600 4.7 14.2 1.0 O C:HOH703 4.7 6.3 1.0 PA C:ATP600 4.8 14.2 1.0 O1A C:ATP600 5.0 14.2 1.0

Magnesium binding site 3 out of 5 in the Chloroplast F1FO Conformation 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Chloroplast F1FO Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:5.2 occ:1.00 O3B D:ADP600 2.0 7.8 1.0 O D:HOH802 2.1 4.0 1.0 O D:HOH801 2.1 3.8 1.0 O2B D:ADP600 2.2 7.8 1.0 OG1 D:THR179 2.3 6.0 1.0 PB D:ADP600 2.5 7.8 1.0 CB D:THR179 3.4 6.0 1.0 O1B D:ADP600 3.6 7.8 1.0 O3A D:ADP600 3.7 7.8 1.0 O2A D:ADP600 3.8 7.8 1.0 NH1 D:ARG205 4.0 5.5 1.0 N D:THR179 4.0 6.0 1.0 O D:HOH805 4.0 8.0 1.0 PA D:ADP600 4.0 7.8 1.0 OE1 D:GLU204 4.1 5.6 1.0 O1A D:ADP600 4.3 7.8 1.0 CA D:THR179 4.3 6.0 1.0 OE2 D:GLU208 4.4 7.8 1.0 NZ D:LYS178 4.5 4.7 1.0 CG2 D:THR179 4.5 6.0 1.0 CE D:LYS178 4.6 4.7 1.0 CB D:LYS178 4.8 4.7 1.0 OE2 D:GLU204 4.8 5.6 1.0 OD2 D:ASP273 4.8 5.6 1.0 CD D:GLU204 4.8 5.6 1.0 C D:LYS178 4.9 4.7 1.0 CZ D:ARG205 5.0 5.5 1.0 OE1 D:GLU208 5.0 7.8 1.0

Magnesium binding site 4 out of 5 in the Chloroplast F1FO Conformation 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Chloroplast F1FO Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg601 b:13.2 occ:1.00 O E:HOH703 2.1 13.7 1.0 O2B E:ATP600 2.1 14.0 1.0 OG1 E:THR177 2.1 8.0 1.0 O2G E:ATP600 2.1 14.0 1.0 O E:HOH702 3.0 6.7 1.0 CB E:THR177 3.2 8.0 1.0 PB E:ATP600 3.3 14.0 1.0 PG E:ATP600 3.4 14.0 1.0 O3B E:ATP600 3.4 14.0 1.0 O2A E:ATP600 3.6 14.0 1.0 OD2 E:ASP262 4.0 6.5 1.0 CG2 E:THR177 4.1 8.0 1.0 PA E:ATP600 4.1 14.0 1.0 N E:THR177 4.1 8.0 1.0 O3A E:ATP600 4.2 14.0 1.0 CA E:THR177 4.2 8.0 1.0 O1A E:ATP600 4.3 14.0 1.0 O3G E:ATP600 4.3 14.0 1.0 O1G E:ATP600 4.4 14.0 1.0 O1B E:ATP600 4.4 14.0 1.0 NE2 E:GLN201 4.6 7.1 1.0 OD1 E:ASP262 4.6 6.5 1.0 CG E:ASP262 4.8 6.5 1.0 O E:HOH701 4.9 13.9 1.0

Magnesium binding site 5 out of 5 in the Chloroplast F1FO Conformation 1


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Chloroplast F1FO Conformation 1 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:6.5 occ:1.00 O F:HOH801 2.1 7.1 1.0 O F:HOH802 2.1 5.2 1.0 O2B F:ADP600 2.1 7.2 1.0 OG1 F:THR179 2.6 12.0 1.0 PB F:ADP600 3.3 7.2 1.0 OE1 F:GLU204 3.5 6.6 1.0 O F:HOH803 3.9 7.4 1.0 O3B F:ADP600 3.9 7.2 1.0 O1B F:ADP600 3.9 7.2 1.0 OD1 F:ASP273 3.9 4.3 1.0 CD F:GLU204 4.0 6.6 1.0 CB F:THR179 4.0 12.0 1.0 NZ F:LYS178 4.1 8.5 1.0 CE F:LYS178 4.1 8.5 1.0 NH1 F:ARG205 4.1 5.9 1.0 OD2 F:ASP273 4.2 4.3 1.0 OE2 F:GLU204 4.3 6.6 1.0 CG F:ASP273 4.5 4.3 1.0 O3A F:ADP600 4.6 7.2 1.0 N F:THR179 4.6 12.0 1.0 OE1 F:GLU208 4.8 7.9 1.0 CA F:THR179 4.8 12.0 1.0 CG2 F:THR179 4.9 12.0 1.0 CB F:LYS178 4.9 8.5 1.0 CG F:GLU204 5.0 6.6 1.0 ND2 F:ASN274 5.0 3.2 1.0 O2A F:ADP600 5.0 7.2 1.0

A.Hahn, J.Vonck, D.J.Mills, T.Meier, W.Kuhlbrandt. Structure, Mechanism, and Regulation of the Chloroplast Atp Synthase. Science V. 360 2018.
ISSN: ESSN 1095-9203
PubMed: 29748256
DOI: 10.1126/SCIENCE.AAT4318