Magnesium in PDB 6fog: X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Enzymatic activity of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
All present enzymatic activity of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.:
3.7.1.5;
4.1.1.3;
Protein crystallography data
The structure of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution., PDB code: 6fog
was solved by
A.Naschberger,
A.K.H.Weiss,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
85.53 /
1.94
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
75.984,
116.679,
125.753,
90.00,
89.94,
90.00
|
R / Rfree (%)
|
18.1 /
20.8
|
Other elements in 6fog:
The structure of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Magnesium atom in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
(pdb code 6fog). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 12 binding sites of Magnesium where determined in the
X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution., PDB code: 6fog:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 1 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg301
b:21.9
occ:1.00
|
OE2
|
A:GLU73
|
2.1
|
30.1
|
1.0
|
O
|
A:HOH411
|
2.1
|
22.2
|
1.0
|
O2
|
A:OXL302
|
2.1
|
24.4
|
0.9
|
O1
|
A:OXL302
|
2.2
|
27.7
|
0.9
|
OE1
|
A:GLU71
|
2.2
|
25.7
|
1.0
|
OD2
|
A:ASP102
|
2.2
|
26.6
|
1.0
|
C2
|
A:OXL302
|
2.9
|
24.3
|
0.9
|
C1
|
A:OXL302
|
2.9
|
23.1
|
0.9
|
CD
|
A:GLU73
|
3.1
|
24.9
|
1.0
|
CG
|
A:ASP102
|
3.3
|
24.2
|
1.0
|
CD
|
A:GLU71
|
3.4
|
30.1
|
1.0
|
OE1
|
A:GLU73
|
3.5
|
26.7
|
1.0
|
CB
|
A:ASP102
|
3.7
|
27.0
|
1.0
|
NZ
|
A:LYS123
|
3.8
|
33.0
|
1.0
|
O
|
A:VAL23
|
4.1
|
23.6
|
1.0
|
O4
|
A:OXL302
|
4.1
|
21.8
|
0.9
|
O3
|
A:OXL302
|
4.1
|
25.1
|
0.9
|
OE2
|
A:GLU71
|
4.2
|
27.1
|
1.0
|
CZ
|
A:PHE45
|
4.2
|
30.7
|
1.0
|
CB
|
A:GLU71
|
4.4
|
27.6
|
1.0
|
OD1
|
A:ASP102
|
4.4
|
21.6
|
1.0
|
CG
|
A:GLU73
|
4.4
|
23.2
|
1.0
|
N
|
A:THR192
|
4.4
|
20.2
|
1.0
|
CA
|
A:GLY191
|
4.5
|
19.3
|
1.0
|
CG
|
A:GLU71
|
4.5
|
32.1
|
1.0
|
CG2
|
A:THR192
|
4.5
|
22.0
|
1.0
|
CB
|
A:THR192
|
4.7
|
19.6
|
1.0
|
O
|
A:HOH404
|
4.7
|
42.7
|
1.0
|
CE1
|
A:PHE45
|
4.7
|
27.6
|
1.0
|
C
|
A:GLY191
|
4.8
|
21.4
|
1.0
|
CE
|
A:LYS123
|
5.0
|
28.6
|
1.0
|
|
Magnesium binding site 2 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 2 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg304
b:29.1
occ:1.00
|
O
|
C:LYS18
|
2.3
|
17.6
|
1.0
|
O
|
A:LYS18
|
2.3
|
22.4
|
1.0
|
O
|
C:HOH433
|
2.4
|
24.6
|
1.0
|
O
|
A:HOH447
|
2.5
|
36.0
|
1.0
|
OD1
|
C:ASN19
|
2.5
|
24.3
|
1.0
|
OD1
|
A:ASN19
|
2.6
|
27.7
|
1.0
|
C
|
C:LYS18
|
3.2
|
16.3
|
1.0
|
C
|
A:LYS18
|
3.3
|
18.6
|
1.0
|
CG
|
C:ASN19
|
3.4
|
16.5
|
1.0
|
CG
|
A:ASN19
|
3.5
|
16.4
|
1.0
|
CA
|
C:ASN19
|
3.6
|
16.6
|
1.0
|
CA
|
A:ASN19
|
3.8
|
15.8
|
1.0
|
N
|
C:ASN19
|
3.8
|
16.4
|
1.0
|
N
|
A:ASN19
|
3.9
|
18.0
|
1.0
|
CB
|
C:ASN19
|
4.0
|
17.6
|
1.0
|
CB
|
A:ASN19
|
4.1
|
16.4
|
1.0
|
CA
|
C:LYS18
|
4.3
|
17.2
|
1.0
|
CA
|
A:LYS18
|
4.4
|
22.3
|
1.0
|
N
|
A:SER49
|
4.4
|
21.0
|
1.0
|
N
|
C:SER49
|
4.4
|
19.8
|
1.0
|
ND2
|
C:ASN19
|
4.5
|
18.1
|
1.0
|
CB
|
C:LYS18
|
4.5
|
18.6
|
1.0
|
ND2
|
A:ASN19
|
4.5
|
20.4
|
1.0
|
CB
|
A:LYS18
|
4.5
|
25.9
|
1.0
|
O
|
A:HOH463
|
4.6
|
26.7
|
1.0
|
CA
|
A:PRO48
|
4.7
|
19.5
|
1.0
|
CA
|
C:PRO48
|
4.8
|
20.6
|
1.0
|
O
|
C:LYS47
|
4.8
|
22.8
|
1.0
|
O
|
A:LYS47
|
4.9
|
21.9
|
1.0
|
C
|
C:ASN19
|
4.9
|
15.5
|
1.0
|
CB
|
C:SER49
|
4.9
|
18.9
|
1.0
|
CB
|
A:SER49
|
4.9
|
21.0
|
1.0
|
C
|
A:PRO48
|
5.0
|
18.9
|
1.0
|
N
|
C:ILE20
|
5.0
|
15.0
|
1.0
|
|
Magnesium binding site 3 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 3 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg301
b:21.4
occ:1.00
|
OE1
|
G:GLU71
|
2.0
|
21.4
|
1.0
|
OE2
|
G:GLU73
|
2.1
|
25.9
|
1.0
|
OD2
|
G:ASP102
|
2.2
|
20.4
|
1.0
|
O3
|
G:OXL302
|
2.2
|
18.7
|
0.9
|
O
|
G:HOH404
|
2.3
|
31.1
|
1.0
|
O4
|
G:OXL302
|
2.3
|
22.6
|
0.9
|
C1
|
G:OXL302
|
3.0
|
30.6
|
0.9
|
C2
|
G:OXL302
|
3.0
|
32.3
|
0.9
|
CD
|
G:GLU73
|
3.2
|
30.4
|
1.0
|
CD
|
G:GLU71
|
3.2
|
30.0
|
1.0
|
CG
|
G:ASP102
|
3.2
|
19.6
|
1.0
|
OE1
|
G:GLU73
|
3.6
|
30.6
|
1.0
|
CB
|
G:ASP102
|
3.7
|
20.0
|
1.0
|
NZ
|
G:LYS123
|
3.7
|
19.6
|
1.0
|
OE2
|
G:GLU71
|
4.0
|
37.8
|
1.0
|
O1
|
G:OXL302
|
4.2
|
26.4
|
0.9
|
CB
|
G:GLU71
|
4.3
|
23.8
|
1.0
|
CZ
|
G:PHE45
|
4.3
|
22.9
|
1.0
|
O2
|
G:OXL302
|
4.3
|
37.2
|
0.9
|
CG
|
G:GLU71
|
4.3
|
27.5
|
1.0
|
O
|
G:VAL23
|
4.3
|
25.2
|
1.0
|
OD1
|
G:ASP102
|
4.3
|
24.1
|
1.0
|
CG2
|
G:THR192
|
4.5
|
22.2
|
1.0
|
CG
|
G:GLU73
|
4.5
|
29.9
|
1.0
|
N
|
G:THR192
|
4.5
|
23.4
|
1.0
|
CB
|
G:THR192
|
4.6
|
22.4
|
1.0
|
CA
|
G:GLY191
|
4.6
|
17.6
|
1.0
|
CE1
|
G:PHE45
|
4.8
|
23.6
|
1.0
|
O
|
G:HOH440
|
4.8
|
35.2
|
1.0
|
CE
|
G:LYS123
|
4.9
|
18.6
|
1.0
|
C
|
G:GLY191
|
4.9
|
18.4
|
1.0
|
|
Magnesium binding site 4 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 4 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg303
b:17.8
occ:1.00
|
O
|
E:LYS18
|
2.3
|
20.8
|
1.0
|
O
|
G:LYS18
|
2.3
|
13.9
|
1.0
|
O
|
G:HOH458
|
2.4
|
26.7
|
1.0
|
O
|
E:HOH415
|
2.5
|
26.4
|
1.0
|
OD1
|
G:ASN19
|
2.6
|
21.0
|
1.0
|
OD1
|
E:ASN19
|
2.6
|
17.0
|
1.0
|
C
|
E:LYS18
|
3.2
|
21.4
|
1.0
|
C
|
G:LYS18
|
3.3
|
15.3
|
1.0
|
CG
|
G:ASN19
|
3.5
|
14.4
|
1.0
|
CG
|
E:ASN19
|
3.5
|
16.3
|
1.0
|
CA
|
E:ASN19
|
3.6
|
16.9
|
1.0
|
CA
|
G:ASN19
|
3.8
|
13.7
|
1.0
|
N
|
E:ASN19
|
3.9
|
18.5
|
1.0
|
N
|
G:ASN19
|
3.9
|
14.9
|
1.0
|
CB
|
E:ASN19
|
4.1
|
15.1
|
1.0
|
CB
|
G:ASN19
|
4.1
|
13.2
|
1.0
|
N
|
E:SER49
|
4.2
|
20.3
|
1.0
|
CA
|
G:LYS18
|
4.3
|
14.4
|
1.0
|
CA
|
E:LYS18
|
4.3
|
18.6
|
1.0
|
N
|
G:SER49
|
4.4
|
23.8
|
1.0
|
CB
|
G:LYS18
|
4.5
|
15.1
|
1.0
|
ND2
|
G:ASN19
|
4.5
|
14.0
|
1.0
|
ND2
|
E:ASN19
|
4.6
|
17.9
|
1.0
|
O
|
G:HOH474
|
4.6
|
27.7
|
1.0
|
CB
|
E:LYS18
|
4.6
|
21.9
|
1.0
|
CA
|
E:PRO48
|
4.6
|
17.1
|
1.0
|
O
|
E:LYS47
|
4.7
|
16.1
|
1.0
|
CB
|
E:SER49
|
4.8
|
19.0
|
1.0
|
C
|
E:PRO48
|
4.9
|
16.5
|
1.0
|
CA
|
G:PRO48
|
4.9
|
20.2
|
1.0
|
C
|
E:ASN19
|
4.9
|
17.1
|
1.0
|
O
|
G:LYS47
|
5.0
|
22.0
|
1.0
|
CB
|
G:SER49
|
5.0
|
20.7
|
1.0
|
|
Magnesium binding site 5 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 5 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg301
b:21.7
occ:1.00
|
OE2
|
F:GLU73
|
2.0
|
18.9
|
1.0
|
OE1
|
F:GLU71
|
2.0
|
23.5
|
1.0
|
O3
|
F:OXL303
|
2.1
|
20.8
|
0.9
|
OD2
|
F:ASP102
|
2.2
|
22.4
|
1.0
|
O
|
F:HOH407
|
2.3
|
15.8
|
1.0
|
O4
|
F:OXL303
|
2.3
|
23.0
|
0.9
|
C1
|
F:OXL303
|
3.0
|
29.4
|
0.9
|
C2
|
F:OXL303
|
3.1
|
29.6
|
0.9
|
CD
|
F:GLU73
|
3.1
|
21.3
|
1.0
|
CD
|
F:GLU71
|
3.3
|
16.5
|
1.0
|
CG
|
F:ASP102
|
3.3
|
22.2
|
1.0
|
OE1
|
F:GLU73
|
3.5
|
23.2
|
1.0
|
CB
|
F:ASP102
|
3.6
|
22.8
|
1.0
|
NZ
|
F:LYS123
|
3.8
|
34.4
|
1.0
|
OE2
|
F:GLU71
|
4.0
|
18.8
|
1.0
|
O1
|
F:OXL303
|
4.2
|
24.7
|
0.9
|
O
|
F:VAL23
|
4.2
|
25.1
|
1.0
|
CB
|
F:GLU71
|
4.2
|
18.4
|
1.0
|
O2
|
F:OXL303
|
4.3
|
35.3
|
0.9
|
CG
|
F:GLU71
|
4.3
|
17.5
|
1.0
|
CG
|
F:GLU73
|
4.3
|
20.1
|
1.0
|
N
|
F:THR192
|
4.4
|
22.6
|
1.0
|
CZ
|
F:PHE45
|
4.4
|
23.4
|
1.0
|
CG2
|
F:THR192
|
4.4
|
27.9
|
1.0
|
OD1
|
F:ASP102
|
4.4
|
18.5
|
1.0
|
CA
|
F:GLY191
|
4.5
|
21.8
|
1.0
|
CB
|
F:THR192
|
4.5
|
23.3
|
1.0
|
C
|
F:GLY191
|
4.7
|
22.9
|
1.0
|
CE1
|
F:PHE45
|
4.9
|
25.6
|
1.0
|
O
|
F:HOH425
|
4.9
|
26.5
|
1.0
|
|
Magnesium binding site 6 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 6 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg302
b:19.3
occ:1.00
|
O
|
F:HOH420
|
2.2
|
18.1
|
1.0
|
O
|
H:HOH432
|
2.2
|
30.0
|
1.0
|
O
|
H:LYS18
|
2.4
|
17.2
|
1.0
|
O
|
F:LYS18
|
2.4
|
21.7
|
1.0
|
OD1
|
H:ASN19
|
2.6
|
23.6
|
1.0
|
OD1
|
F:ASN19
|
2.6
|
22.1
|
1.0
|
C
|
H:LYS18
|
3.3
|
18.5
|
1.0
|
C
|
F:LYS18
|
3.4
|
20.7
|
1.0
|
CG
|
H:ASN19
|
3.5
|
19.5
|
1.0
|
CG
|
F:ASN19
|
3.6
|
18.1
|
1.0
|
CA
|
H:ASN19
|
3.7
|
16.5
|
1.0
|
CA
|
F:ASN19
|
3.7
|
19.7
|
1.0
|
N
|
H:ASN19
|
4.0
|
19.8
|
1.0
|
N
|
F:ASN19
|
4.0
|
26.5
|
1.0
|
CB
|
H:ASN19
|
4.1
|
17.2
|
1.0
|
CB
|
F:ASN19
|
4.1
|
24.3
|
1.0
|
N
|
F:SER49
|
4.3
|
22.8
|
1.0
|
N
|
H:SER49
|
4.4
|
21.9
|
1.0
|
O
|
H:HOH466
|
4.4
|
25.8
|
1.0
|
CA
|
H:LYS18
|
4.4
|
19.5
|
1.0
|
CA
|
F:LYS18
|
4.5
|
20.4
|
1.0
|
ND2
|
H:ASN19
|
4.6
|
17.2
|
1.0
|
ND2
|
F:ASN19
|
4.6
|
23.5
|
1.0
|
CB
|
H:LYS18
|
4.6
|
18.5
|
1.0
|
CA
|
F:PRO48
|
4.6
|
18.9
|
1.0
|
CB
|
F:LYS18
|
4.7
|
18.6
|
1.0
|
O
|
F:LYS47
|
4.7
|
17.8
|
1.0
|
CA
|
H:PRO48
|
4.7
|
21.9
|
1.0
|
O
|
H:LYS47
|
4.8
|
26.8
|
1.0
|
C
|
F:PRO48
|
4.9
|
19.6
|
1.0
|
C
|
H:ASN19
|
5.0
|
19.1
|
1.0
|
C
|
F:ASN19
|
5.0
|
22.1
|
1.0
|
CB
|
H:SER49
|
5.0
|
21.2
|
1.0
|
CB
|
F:SER49
|
5.0
|
24.5
|
1.0
|
C
|
H:PRO48
|
5.0
|
25.0
|
1.0
|
|
Magnesium binding site 7 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 7 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg301
b:26.9
occ:1.00
|
O
|
D:HOH430
|
2.1
|
26.6
|
1.0
|
OE2
|
D:GLU73
|
2.1
|
31.1
|
1.0
|
OD2
|
D:ASP102
|
2.1
|
23.5
|
1.0
|
OE1
|
D:GLU71
|
2.2
|
24.7
|
1.0
|
O4
|
D:OXL303
|
2.2
|
20.3
|
0.8
|
O3
|
D:OXL303
|
2.3
|
19.4
|
0.8
|
C2
|
D:OXL303
|
2.9
|
24.8
|
0.8
|
C1
|
D:OXL303
|
3.0
|
19.2
|
0.8
|
CD
|
D:GLU73
|
3.1
|
19.8
|
1.0
|
CG
|
D:ASP102
|
3.2
|
21.9
|
1.0
|
CD
|
D:GLU71
|
3.4
|
24.8
|
1.0
|
OE1
|
D:GLU73
|
3.5
|
17.1
|
1.0
|
CB
|
D:ASP102
|
3.6
|
21.6
|
1.0
|
NZ
|
D:LYS123
|
3.7
|
33.7
|
1.0
|
O2
|
D:OXL303
|
4.1
|
24.9
|
0.8
|
OE2
|
D:GLU71
|
4.1
|
34.1
|
1.0
|
O
|
D:VAL23
|
4.1
|
18.6
|
1.0
|
CZ
|
D:PHE45
|
4.2
|
16.0
|
1.0
|
O1
|
D:OXL303
|
4.2
|
15.0
|
0.8
|
OD1
|
D:ASP102
|
4.3
|
23.2
|
1.0
|
CB
|
D:GLU71
|
4.4
|
23.1
|
1.0
|
CG
|
D:GLU73
|
4.4
|
22.1
|
1.0
|
CG
|
D:GLU71
|
4.5
|
23.4
|
1.0
|
N
|
D:THR192
|
4.5
|
20.8
|
1.0
|
CA
|
D:GLY191
|
4.6
|
21.7
|
1.0
|
CG2
|
D:THR192
|
4.6
|
21.3
|
1.0
|
CE1
|
D:PHE45
|
4.7
|
16.9
|
1.0
|
CB
|
D:THR192
|
4.7
|
21.9
|
1.0
|
C
|
D:GLY191
|
4.9
|
17.7
|
1.0
|
CE
|
D:LYS123
|
4.9
|
29.6
|
1.0
|
|
Magnesium binding site 8 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 8 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg302
b:30.7
occ:1.00
|
O
|
B:LYS18
|
2.3
|
28.0
|
1.0
|
O
|
D:HOH437
|
2.4
|
25.9
|
1.0
|
O
|
D:LYS18
|
2.4
|
17.4
|
1.0
|
O
|
B:HOH450
|
2.4
|
20.8
|
1.0
|
OD1
|
D:ASN19
|
2.5
|
29.2
|
1.0
|
OD1
|
B:ASN19
|
2.7
|
32.1
|
1.0
|
C
|
D:LYS18
|
3.3
|
16.4
|
1.0
|
C
|
B:LYS18
|
3.3
|
21.9
|
1.0
|
CG
|
D:ASN19
|
3.4
|
19.4
|
1.0
|
CG
|
B:ASN19
|
3.6
|
19.3
|
1.0
|
CA
|
D:ASN19
|
3.7
|
17.4
|
1.0
|
CA
|
B:ASN19
|
3.7
|
20.0
|
1.0
|
N
|
D:ASN19
|
3.9
|
18.2
|
1.0
|
N
|
B:ASN19
|
4.0
|
24.5
|
1.0
|
CB
|
D:ASN19
|
4.0
|
20.5
|
1.0
|
CB
|
B:ASN19
|
4.1
|
19.8
|
1.0
|
N
|
B:SER49
|
4.2
|
21.1
|
1.0
|
CA
|
D:LYS18
|
4.4
|
19.2
|
1.0
|
N
|
D:SER49
|
4.4
|
18.3
|
1.0
|
CA
|
B:LYS18
|
4.4
|
23.8
|
1.0
|
ND2
|
D:ASN19
|
4.5
|
22.2
|
1.0
|
O
|
D:HOH446
|
4.5
|
19.5
|
1.0
|
CB
|
D:LYS18
|
4.6
|
20.4
|
1.0
|
CA
|
B:PRO48
|
4.6
|
22.5
|
1.0
|
ND2
|
B:ASN19
|
4.7
|
28.6
|
1.0
|
CB
|
B:LYS18
|
4.7
|
21.7
|
1.0
|
O
|
B:LYS47
|
4.8
|
19.8
|
1.0
|
CA
|
D:PRO48
|
4.8
|
16.2
|
1.0
|
O
|
D:LYS47
|
4.8
|
20.6
|
1.0
|
CB
|
B:SER49
|
4.9
|
20.6
|
1.0
|
C
|
B:PRO48
|
4.9
|
22.2
|
1.0
|
C
|
D:ASN19
|
4.9
|
15.9
|
1.0
|
C
|
B:ASN19
|
5.0
|
22.5
|
1.0
|
|
Magnesium binding site 9 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 9 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg301
b:24.0
occ:1.00
|
O1
|
B:OXL302
|
1.9
|
20.2
|
0.9
|
O2
|
B:OXL302
|
2.1
|
20.4
|
0.9
|
OE2
|
B:GLU73
|
2.1
|
22.0
|
1.0
|
OE1
|
B:GLU71
|
2.2
|
22.3
|
1.0
|
O
|
B:HOH411
|
2.2
|
19.8
|
1.0
|
OD2
|
B:ASP102
|
2.2
|
20.6
|
1.0
|
C1
|
B:OXL302
|
2.7
|
17.7
|
0.9
|
C2
|
B:OXL302
|
2.8
|
22.1
|
0.9
|
CD
|
B:GLU73
|
3.2
|
24.3
|
1.0
|
CG
|
B:ASP102
|
3.3
|
24.3
|
1.0
|
CD
|
B:GLU71
|
3.4
|
26.6
|
1.0
|
OE1
|
B:GLU73
|
3.5
|
22.1
|
1.0
|
CB
|
B:ASP102
|
3.7
|
23.5
|
1.0
|
NZ
|
B:LYS123
|
3.8
|
29.4
|
1.0
|
O3
|
B:OXL302
|
3.9
|
15.9
|
0.9
|
O4
|
B:OXL302
|
4.0
|
25.0
|
0.9
|
OE2
|
B:GLU71
|
4.1
|
24.0
|
1.0
|
O
|
B:VAL23
|
4.2
|
24.7
|
1.0
|
CZ
|
B:PHE45
|
4.2
|
30.3
|
1.0
|
O
|
B:HOH402
|
4.4
|
27.5
|
1.0
|
CB
|
B:GLU71
|
4.4
|
28.4
|
1.0
|
OD1
|
B:ASP102
|
4.4
|
23.6
|
1.0
|
N
|
B:THR192
|
4.5
|
20.8
|
1.0
|
CG
|
B:GLU73
|
4.5
|
27.1
|
1.0
|
CG
|
B:GLU71
|
4.5
|
27.9
|
1.0
|
CA
|
B:GLY191
|
4.5
|
19.9
|
1.0
|
CG2
|
B:THR192
|
4.5
|
18.6
|
1.0
|
CE1
|
B:PHE45
|
4.7
|
30.8
|
1.0
|
CB
|
B:THR192
|
4.7
|
17.6
|
1.0
|
C
|
B:GLY191
|
4.8
|
17.7
|
1.0
|
CE
|
B:LYS123
|
4.9
|
29.0
|
1.0
|
|
Magnesium binding site 10 out
of 12 in 6fog
Go back to
Magnesium Binding Sites List in 6fog
Magnesium binding site 10 out
of 12 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution.
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) in Complex with Inhibitor Oxalate at 1.94A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg301
b:23.7
occ:1.00
|
OE2
|
C:GLU73
|
2.1
|
15.3
|
1.0
|
OD2
|
C:ASP102
|
2.1
|
19.9
|
1.0
|
O2
|
C:OXL302
|
2.1
|
16.6
|
0.9
|
OE1
|
C:GLU71
|
2.1
|
29.5
|
1.0
|
O
|
C:HOH422
|
2.2
|
33.0
|
1.0
|
O1
|
C:OXL302
|
2.4
|
19.9
|
0.9
|
C2
|
C:OXL302
|
3.0
|
31.9
|
0.9
|
CD
|
C:GLU73
|
3.1
|
19.4
|
1.0
|
C1
|
C:OXL302
|
3.1
|
25.0
|
0.9
|
CG
|
C:ASP102
|
3.2
|
27.5
|
1.0
|
CD
|
C:GLU71
|
3.4
|
25.2
|
1.0
|
OE1
|
C:GLU73
|
3.5
|
20.4
|
1.0
|
CB
|
C:ASP102
|
3.6
|
24.0
|
1.0
|
NZ
|
C:LYS123
|
3.8
|
19.4
|
1.0
|
OE2
|
C:GLU71
|
4.1
|
29.7
|
1.0
|
O
|
C:VAL23
|
4.2
|
21.6
|
1.0
|
O4
|
C:OXL302
|
4.2
|
32.0
|
0.9
|
CZ
|
C:PHE45
|
4.2
|
21.4
|
1.0
|
OD1
|
C:ASP102
|
4.3
|
32.5
|
1.0
|
O3
|
C:OXL302
|
4.3
|
26.0
|
0.9
|
CB
|
C:GLU71
|
4.3
|
24.4
|
1.0
|
CG
|
C:GLU73
|
4.4
|
20.4
|
1.0
|
CG
|
C:GLU71
|
4.5
|
24.5
|
1.0
|
N
|
C:THR192
|
4.5
|
18.9
|
1.0
|
CA
|
C:GLY191
|
4.5
|
18.9
|
1.0
|
CG2
|
C:THR192
|
4.6
|
18.2
|
1.0
|
O
|
C:HOH425
|
4.7
|
21.1
|
1.0
|
CB
|
C:THR192
|
4.7
|
16.6
|
1.0
|
CE1
|
C:PHE45
|
4.7
|
20.0
|
1.0
|
C
|
C:GLY191
|
4.8
|
14.8
|
1.0
|
CE
|
C:LYS123
|
4.9
|
17.4
|
1.0
|
|
Reference:
A.K.H.Weiss,
A.Naschberger,
J.R.Loeffler,
H.Gstach,
M.W.Bowler,
M.Holzknecht,
E.Cappuccio,
A.Pittl,
S.Etemad,
T.Dunzendorfer-Matt,
K.Scheffzek,
K.R.Liedl,
P.Jansen-Durr.
Structural Basis For the Bi-Functionality of Human Oxaloacetate Decarboxylase FAHD1. Biochem. J. V. 475 3561 2018.
ISSN: ESSN 1470-8728
PubMed: 30348641
DOI: 10.1042/BCJ20180750
Page generated: Tue Oct 1 00:35:04 2024
|