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Magnesium in PDB 6foh: X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.

Enzymatic activity of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.

All present enzymatic activity of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.:
3.7.1.5; 4.1.1.3;

Protein crystallography data

The structure of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution., PDB code: 6foh was solved by A.Naschberger, A.K.H.Weiss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.29 / 1.56
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.090, 77.820, 119.970, 90.00, 90.00, 90.00
R / Rfree (%) 16.2 / 18.9

Other elements in 6foh:

The structure of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution. also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution. (pdb code 6foh). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution., PDB code: 6foh:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 6foh

Go back to Magnesium Binding Sites List in 6foh
Magnesium binding site 1 out of 3 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:13.7
occ:1.00
 O A:LYS18 2.3 11.5 1.0
O B:LYS18 2.3 12.5 1.0
O A:HOH437 2.4 15.0 1.0
OD1 A:ASN19 2.5 13.2 1.0
O B:HOH446 2.5 15.5 1.0
OD1 B:ASN19 2.5 11.6 1.0
C A:LYS18 3.3 12.1 1.0
C B:LYS18 3.3 11.1 1.0
CG A:ASN19 3.5 13.7 1.0
CG B:ASN19 3.5 11.9 1.0
CA A:ASN19 3.6 11.2 1.0
CA B:ASN19 3.7 11.4 1.0
N A:ASN19 3.9 11.7 1.0
N B:ASN19 4.0 11.1 1.0
CB A:ASN19 4.0 12.2 1.0
CB B:ASN19 4.0 11.8 1.0
CA A:LYS18 4.3 11.7 1.0
CA B:LYS18 4.3 10.6 1.0
N B:SER49 4.3 11.0 1.0
N A:SER49 4.4 12.2 1.0
CB B:LYS18 4.5 12.2 1.0
CB A:LYS18 4.5 12.2 1.0
ND2 A:ASN19 4.6 13.3 1.0
ND2 B:ASN19 4.6 13.2 1.0
O A:HOH494 4.6 25.6 1.0
O B:HOH520 4.7 32.8 1.0
CA B:PRO48 4.7 12.9 1.0
CA A:PRO48 4.8 12.9 1.0
O B:LYS47 4.8 12.8 1.0
O A:LYS47 4.9 12.3 1.0
C A:ASN19 4.9 10.8 1.0
CB B:SER49 4.9 11.5 1.0
CB A:SER49 4.9 11.7 1.0
C B:PRO48 4.9 12.8 1.0
C B:ASN19 5.0 11.0 1.0

Magnesium binding site 2 out of 3 in 6foh

Go back to Magnesium Binding Sites List in 6foh
Magnesium binding site 2 out of 3 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:17.7
occ:1.00
 OE2 A:GLU73 2.0 15.9 1.0
OD2 A:ASP102 2.1 15.7 1.0
OE1 A:GLU71 2.1 22.5 1.0
O A:HOH496 2.2 20.8 1.0
O A:HOH405 2.2 19.1 1.0
O A:HOH474 2.2 23.1 1.0
CD A:GLU73 3.0 17.8 1.0
CG A:ASP102 3.2 17.0 1.0
CD A:GLU71 3.3 25.6 1.0
OE1 A:GLU73 3.4 16.2 1.0
CB A:ASP102 3.6 16.2 1.0
NZ A:LYS123 3.9 20.8 1.0
O A:VAL23 3.9 26.7 1.0
O A:HOH491 3.9 44.6 1.0
OE2 A:GLU71 4.1 26.5 1.0
CB A:GLU71 4.2 17.9 1.0
OD1 A:ASP102 4.3 17.0 1.0
CG A:GLU71 4.3 20.2 1.0
CG A:GLU73 4.3 17.6 1.0
CZ A:PHE45 4.4 16.8 1.0
O A:GLY24 4.6 34.9 1.0
O A:HOH506 4.7 25.2 1.0
CA A:GLY191 4.7 18.4 1.0
CG2 A:THR192 4.8 20.9 1.0
CE2 A:PHE45 4.9 18.7 1.0
CB A:THR192 4.9 17.3 1.0
N A:THR192 4.9 17.3 1.0
CE A:LYS123 5.0 18.1 1.0
C A:GLY191 5.0 19.1 1.0

Magnesium binding site 3 out of 3 in 6foh

Go back to Magnesium Binding Sites List in 6foh
Magnesium binding site 3 out of 3 in the X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of X-Ray Structure of Homo Sapiens Fumarylacetoacetate Hydrolase Domain Containing Protein 1 (FAHD1) at 1.56A Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg301

b:16.3
occ:1.00
 OD2 B:ASP102 2.0 16.3 1.0
OE2 B:GLU73 2.0 16.1 1.0
O B:HOH422 2.1 17.3 1.0
OE1 B:GLU71 2.1 19.6 1.0
O B:HOH501 2.1 20.2 1.0
O B:HOH513 2.3 23.9 1.0
CD B:GLU73 3.1 14.3 1.0
CG B:ASP102 3.1 14.4 1.0
CD B:GLU71 3.3 20.9 1.0
OE1 B:GLU73 3.4 13.9 1.0
CB B:ASP102 3.5 12.9 1.0
O B:VAL23 3.8 22.1 1.0
NZ B:LYS123 3.9 18.9 1.0
O B:HOH525 4.1 36.3 1.0
CB B:GLU71 4.2 17.8 1.0
OE2 B:GLU71 4.2 24.4 1.0
OD1 B:ASP102 4.2 16.6 1.0
CG B:GLU71 4.3 19.9 1.0
CG B:GLU73 4.4 14.2 1.0
CZ B:PHE45 4.4 18.6 1.0
O B:HOH527 4.7 21.8 1.0
CE2 B:PHE45 4.8 20.9 1.0
CA B:GLY191 4.9 15.4 1.0
O B:GLY24 4.9 26.9 1.0
CG2 B:THR192 4.9 19.1 1.0
O B:HOH553 4.9 42.7 1.0
CB B:THR192 4.9 15.7 1.0
CA B:ASP102 5.0 12.9 1.0

Reference:

A.K.H.Weiss, A.Naschberger, J.R.Loeffler, H.Gstach, M.W.Bowler, M.Holzknecht, E.Cappuccio, A.Pittl, S.Etemad, T.Dunzendorfer-Matt, K.Scheffzek, K.R.Liedl, P.Jansen-Durr. Structural Basis For the Bi-Functionality of Human Oxaloacetate Decarboxylase FAHD1. Biochem. J. V. 475 3561 2018.
ISSN: ESSN 1470-8728
PubMed: 30348641
DOI: 10.1042/BCJ20180750
Page generated: Tue Oct 1 00:35:04 2024

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