Magnesium in PDB 6g1q: Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose

The structure of Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose, PDB code: 6g1q was solved by A.Ariza, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.16 / 2.10
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.905, 97.458, 105.503, 90.00, 90.00, 90.00
R / Rfree (%)	21.8 / 25.8

The binding sites of Magnesium atom in the Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose (pdb code 6g1q). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose, PDB code: 6g1q:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg401 b:54.7 occ:1.00 OD2 A:ASP305 2.2 59.6 1.0 O A:HOH519 2.2 58.3 1.0 OD1 A:ASP64 2.2 42.4 1.0 OD1 A:ASP63 2.2 51.0 1.0 OG1 A:THR62 2.3 47.6 1.0 O2D A:AR6402 2.3 54.0 1.0 O A:HOH501 3.1 56.7 1.0 CG A:ASP305 3.2 54.0 1.0 CG A:ASP63 3.3 47.5 1.0 CB A:THR62 3.3 46.5 1.0 CG A:ASP64 3.4 40.5 1.0 OD1 A:ASP305 3.7 56.5 1.0 C2D A:AR6402 3.8 53.7 1.0 OD2 A:ASP63 3.8 45.6 1.0 O1D A:AR6402 4.0 63.0 1.0 N A:ASP64 4.0 42.4 1.0 N A:ASP63 4.0 43.1 1.0 CG2 A:THR62 4.1 46.7 1.0 OD2 A:ASP64 4.1 39.9 1.0 OD1 A:ASP26 4.3 36.7 1.0 O3D A:AR6402 4.3 55.0 1.0 OE1 A:GLU33 4.3 75.6 1.0 OG1 A:THR306 4.4 49.9 1.0 O A:GLY101 4.4 48.3 1.0 CB A:ASP64 4.4 40.3 1.0 C1D A:AR6402 4.4 56.8 1.0 CB A:ASP305 4.5 51.2 1.0 CB A:ASP63 4.5 45.2 1.0 CA A:THR62 4.6 42.8 1.0 OE2 A:GLU33 4.6 86.3 1.0 C A:THR62 4.6 44.4 1.0 CA A:ASP63 4.6 44.9 1.0 C3D A:AR6402 4.7 55.0 1.0 CA A:ASP64 4.8 43.3 1.0 CD A:GLU33 4.8 77.1 1.0 C A:ASP63 4.8 45.6 1.0

Magnesium binding site 2 out of 2 in the Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Adp-Ribosylserine Hydrolase ARH3 of Latimeria Chalumnae in Complex with Adp-Ribose within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:56.2 occ:1.00 OD2 B:ASP305 2.2 66.2 1.0 O B:HOH525 2.2 59.8 1.0 OD1 B:ASP64 2.2 48.2 1.0 OD1 B:ASP63 2.3 52.2 1.0 OG1 B:THR62 2.3 51.2 1.0 O2D B:AR6402 2.3 57.1 1.0 O B:HOH501 3.2 55.7 1.0 CG B:ASP305 3.2 60.7 1.0 CG B:ASP63 3.3 49.8 1.0 CB B:THR62 3.3 49.8 1.0 CG B:ASP64 3.4 45.5 1.0 OD1 B:ASP305 3.7 63.0 1.0 OD2 B:ASP63 3.7 48.7 1.0 C2D B:AR6402 3.8 56.0 1.0 N B:ASP64 4.0 43.5 1.0 O1D B:AR6402 4.0 60.2 1.0 N B:ASP63 4.0 47.4 1.0 CG2 B:THR62 4.1 50.1 1.0 OD2 B:ASP64 4.1 45.9 1.0 OE1 B:GLU33 4.2 81.4 1.0 OD1 B:ASP26 4.3 39.8 1.0 O B:GLY101 4.3 57.0 1.0 CB B:ASP64 4.4 42.4 1.0 OG1 B:THR306 4.4 51.2 1.0 O3D B:AR6402 4.4 54.6 1.0 CB B:ASP305 4.5 55.6 1.0 CB B:ASP63 4.5 48.9 1.0 C1D B:AR6402 4.5 58.4 1.0 CA B:THR62 4.5 47.5 1.0 C B:THR62 4.6 46.7 1.0 OE2 B:GLU33 4.6 77.9 1.0 C3D B:AR6402 4.7 56.5 1.0 CA B:ASP63 4.7 48.2 1.0 CA B:ASP64 4.8 43.7 1.0 C B:ASP63 4.8 45.6 1.0 CD B:GLU33 4.8 75.7 1.0 C B:GLY101 4.9 55.4 1.0

J.G.M.Rack, A.Ariza, B.S.Drown, C.Henfrey, E.Bartlett, T.Shirai, P.J.Hergenrother, I.Ahel. (Adp-Ribosyl)Hydrolases: Structural Basis For Differential Substrate Recognition and Inhibition. Cell Chem Biol V. 25 1533 2018.
ISSN: ESSN 2451-9448
PubMed: 30472116
DOI: 10.1016/J.CHEMBIOL.2018.11.001